Pseudomonas sp. HPB0071, HMPREF1487_06162

Gene Feature Overview

Strain	Pseudomonas sp. HPB0071 GCF_000478505.2|latest
Locus Tag	HMPREF1487_06162
NCBI Locus Tag	HMPREF1487_RS09195
Name
Replicon	scaffold_1
Genomic location	1951422 - 1952729 (- strand)

Cross-References

RefSeq	WP_010796358.1
GI	498495627
INSDC	ENA33394.1
NCBI Locus Tag	HMPREF1487_RS09195
NCBI Old Locus Tag	HMPREF1487_06162
UniParc	UPI0002CC37F7
UniProtKB Acc	N2J2Z1
UniProtKB ID	N2J2Z1_9PSED
UniRef100	UniRef100_N2J2Z1
UniRef50	UniRef50_Q4KKR1
UniRef90	UniRef90_N2J2Z1

Product

Feature Type	CDS
Coding Frame	1
Product Name	ribosomal RNA small subunit methyltransferase B
Synonyms
Evidence for Translation
Charge (pH 7)	3.94
Kyte-Doolittle Hydrophobicity Value	-0.121
Molecular Weight (kDa)	47.7
Isoelectric Point (pI)	8.02

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000017 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: HMPREF1487_06162 Search term: ribosomal RNA small subunit methyltransferase B

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000313272 NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867] E-value: 2.4e-26 Percent Identity: 33.6
Ensembl 110, assembly GRCh38.p14	ENSP00000439422 NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867] E-value: 2.4e-26 Percent Identity: 33.6
Ensembl 110, assembly GRCh38.p14	ENSP00000371858 NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867] E-value: 2.4e-26 Percent Identity: 33.6
Ensembl 110, assembly GRCh38.p14	ENSP00000443150 NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867] E-value: 2.4e-26 Percent Identity: 33.6
Ensembl 110, assembly GRCh38.p14	ENSP00000382392 NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867] E-value: 2.4e-26 Percent Identity: 33.6
Ensembl 110, assembly GRCh38.p14	ENSP00000444437 NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867] E-value: 2.4e-26 Percent Identity: 33.6

References