Pseudomonas sp. HPB0071, HMPREF1487_06074

Gene Feature Overview

Strain	Pseudomonas sp. HPB0071 GCF_000478505.2|latest
Locus Tag	HMPREF1487_06074
NCBI Locus Tag	HMPREF1487_RS08750
Name
Replicon	scaffold_1
Genomic location	1848301 - 1849863 (+ strand)

Cross-References

RefSeq	WP_010796270.1
GI	498495537
INSDC	ENA34414.1
NCBI Locus Tag	HMPREF1487_RS08750
NCBI Old Locus Tag	HMPREF1487_06074
UniParc	UPI0002CC3121
UniProtKB Acc	N2J5U9
UniProtKB ID	N2J5U9_9PSED
UniRef100	UniRef100_N2J5U9
UniRef50	UniRef50_I4Y410
UniRef90	UniRef90_N2J5U9

Product

Feature Type	CDS
Coding Frame	1
Product Name	type VI secretion-associated protein
Synonyms
Evidence for Translation
Charge (pH 7)	-9.18
Kyte-Doolittle Hydrophobicity Value	-0.286
Molecular Weight (kDa)	58.1
Isoelectric Point (pI)	5.78

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000081 (1178 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: HMPREF1487_06074 Search term: type VI secretion-associated protein

Human Homologs

References