Pseudomonas sp. HPB0071, HMPREF1487_05986

Gene Feature Overview

Strain	Pseudomonas sp. HPB0071 GCF_000478505.2|latest
Locus Tag	HMPREF1487_05986
NCBI Locus Tag	HMPREF1487_RS08315
Name
Replicon	scaffold_1
Genomic location	1744341 - 1745870 (- strand)

Cross-References

RefSeq	WP_010796188.1
GI	498495455
INSDC	ENA34332.1
NCBI Locus Tag	HMPREF1487_RS08315
NCBI Old Locus Tag	HMPREF1487_05986
UniParc	UPI0002CBC026
UniProtKB Acc	N2J3W9
UniProtKB ID	N2J3W9_9PSED
UniRef100	UniRef100_N2J3W9
UniRef50	UniRef50_I4N1X1
UniRef90	UniRef90_N2J3W9

Product

Feature Type	CDS
Coding Frame	1
Product Name	diguanylate cyclase (GGDEF) domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7)	3.51
Kyte-Doolittle Hydrophobicity Value	-0.147
Molecular Weight (kDa)	56.6
Isoelectric Point (pI)	7.75

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002285 (661 members)
Putative Inparalogs	3 predicted inparalogs diguanylate cyclase (GGDEF) domain-containing protein (HMPREF1487_08101) 47.7% identity hypothetical protein (HMPREF1487_09254) 48.4% identity diguanylate cyclase (GGDEF) domain-containing protein (HMPREF1487_09253) 58.4% identity

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: HMPREF1487_05986 Search term: diguanylate cyclase (GGDEF) domain-containing protein

Human Homologs

References