Pseudomonas sp. GM41(2012), PMI27_002796

Gene Feature Overview

Strain	Pseudomonas sp. GM41(2012) GCF_000282315.2|latest
Locus Tag	PMI27_002796
NCBI Locus Tag	PMI27_RS13295
Name
Replicon	ctg3
Genomic location	259500 - 260831 (+ strand)

Cross-References

RefSeq	WP_008150090.1
GI	495425393
INSDC	EUB73053.1
NCBI Locus Tag	PMI27_RS13295
NCBI Old Locus Tag	PMI27_002796
UniParc	UPI000270538E
UniProtKB Acc	W6V1A0
UniProtKB ID	W6V1A0_9PSED
UniRef100	UniRef100_W6V1A0
UniRef50	UniRef50_Q9I358
UniRef90	UniRef90_I4Y4Q8

Product

Feature Type	CDS
Coding Frame	1
Product Name	type VI secretion protein
Synonyms
Evidence for Translation
Charge (pH 7)	-6.78
Kyte-Doolittle Hydrophobicity Value	-0.213
Molecular Weight (kDa)	49.7
Isoelectric Point (pI)	6.33

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000078 (854 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PMI27_002796 Search term: type VI secretion protein

Human Homologs

References