Pseudomonas putida H8234, L483_12110

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida H8234
GCF_000410575.1|latest
Locus Tag
L483_12110
Name
Replicon chromosome
Genomic location 2605246 - 2606895 (+ strand)

Cross-References

RefSeq YP_008094208.1
GI 512577835
Entrez 16178709
INSDC AGN78876.1
NCBI Locus Tag L483_12110
UniParc UPI00034EEE0B
UniProtKB Acc R9V416
UniProtKB ID R9V416_PSEPU
UniRef100 UniRef100_R9V416
UniRef50 UniRef50_Q9I2N0
UniRef90 UniRef90_Q88J11

Product

Feature Type CDS
Coding Frame 1
Product Name
nuclease
Synonyms
Evidence for Translation
Charge (pH 7) -5.55
Kyte-Doolittle Hydrophobicity Value -0.242
Molecular Weight (kDa) 63.4
Isoelectric Point (pI) 6.41

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 34 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003538 (532 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: L483_12110
Search term: nuclease

Human Homologs

Ensembl 110, assembly GRCh38.p14
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value: 2.3e-18
Percent Identity: 34.7
Ensembl 110, assembly GRCh38.p14
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value: 2.3e-18
Percent Identity: 34.7
Ensembl 110, assembly GRCh38.p14
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value: 2.3e-18
Percent Identity: 34.7
Ensembl 110, assembly GRCh38.p14
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value: 2.3e-18
Percent Identity: 34.7
Ensembl 110, assembly GRCh38.p14
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value: 2.3e-18
Percent Identity: 34.7
Ensembl 110, assembly GRCh38.p14
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value: 2.3e-18
Percent Identity: 34.7

References

No references are associated with this feature.