Pseudomonas putida H8234, L483_11550 (ligD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida H8234
GCF_000410575.1|latest
Locus Tag
L483_11550
Name
ligD
Replicon chromosome
Genomic location 2493728 - 2496193 (- strand)

Cross-References

RefSeq YP_008094096.1
GI 512577808
EC Number 6.5.1.1
Entrez 16178939
INSDC AGN78849.1
NCBI Locus Tag L483_11550
UniParc UPI00034F0D10
UniProtKB Acc R9V1S5
UniProtKB ID R9V1S5_PSEPU
UniRef100 UniRef100_R9V1S5
UniRef50 UniRef50_Q9I1X7
UniRef90 UniRef90_R9V1S5

Product

Feature Type CDS
Coding Frame 1
Product Name
ATP-dependent DNA ligase
Synonyms
Evidence for Translation
Charge (pH 7) 13.45
Kyte-Doolittle Hydrophobicity Value -0.481
Molecular Weight (kDa) 91.8
Isoelectric Point (pI) 9.23

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 295 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003336 (490 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: L483_11550
Search term: ligD

Human Homologs

References

No references are associated with this feature.