Pseudomonas putida H8234, L483_02415

Gene Feature Overview

Strain	Pseudomonas putida H8234 GCF_000410575.1|latest
Locus Tag	L483_02415
Name
Replicon	chromosome
Genomic location	520108 - 520641 (+ strand)

Cross-References

RefSeq	YP_008092327.1
GI	512576532
Entrez	16174665
INSDC	AGN77573.1
NCBI Locus Tag	L483_02415
UniParc	UPI000000EB42
UniProtKB Acc	R9V2A0
UniProtKB ID	R9V2A0_PSEPU
UniRef100	UniRef100_A5VXR2
UniRef50	UniRef50_P49548
UniRef90	UniRef90_Q889V6

Product

Feature Type	CDS
Coding Frame	1
Product Name	50S ribosomal protein L6
Synonyms
Evidence for Translation
Charge (pH 7)	8.47
Kyte-Doolittle Hydrophobicity Value	-0.385
Molecular Weight (kDa)	19.1
Isoelectric Point (pI)	10.37

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
7UNW	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.6	ELECTRON MICROSCOPY	90.4
7UNV	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.7	ELECTRON MICROSCOPY	90.4
7UNR	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.9	ELECTRON MICROSCOPY	90.4
7UNU	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.9	ELECTRON MICROSCOPY	90.4
6SPD	RIBOSOME	09/01/19	Pseudomonas aeruginosa 50s ribosome from a clinical isolate	Pseudomonas aeruginosa	3.28	ELECTRON MICROSCOPY	90.2
6SPG	RIBOSOME	09/01/19	Pseudomonas aeruginosa 70s ribosome from a clinical isolate	Pseudomonas aeruginosa	3.34	ELECTRON MICROSCOPY	90.2

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 643 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001462 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: L483_02415 Search term: 50S ribosomal protein L6

Human Homologs

References