Pseudomonas synxantha BG33R, PseBG33_3128 (tssL2)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAACGCGCGCAGCTGGACGTGCATTATCGACACAGCGACCAGGGCGCCAGTTTTCGTGGGCTGATGGAGCGCGTACGCGCCGTCCTGTCGGTGGTGCTTG AGCAACATGCGATCGAATTGACATTGCAACCACGCCAGTACGGCGTTCTGGTCTGCCCGGTCAGCGAGTTGAAATTGCTCGGCACGGCCACGTTCATCCT GGCAGCCACCGCGCAGTGTGAGGCAGAGGAACTGCGCCAGCGCCTGCCGGCCCACCTGAAAGTCGGGCCGGTAGAGCGCATACGTGAGTTGGTCAACCTG CACCTGGCCGGTATCAAGGTCAAGCCGCTGCCAGTGGCGCCGCGGCAGATTCCGTTTCATGCCGGCAAGACCTATTTCATCCTCGATATGAGTGCCCCCG AGATCGCGCAATTGCAGCAGTCGGGCGGTTTCGCGTTCCACGTAGGCGGTGACTTCGCCGGGCTTGAACTCAACTTTTGGGCCATCAGGAATTGAATGCC
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| DNA Sequence for Gene |
>PseBG33_3128
|tssL2
ATGGACAGTGAGTACACACAGGATGAAAGAACCGTCCTGCTCGACCGTGAGGGTCATGGGCCTGCACAGGGGCCATTGACGGACTTCCCATCGCCGCCAC GCTATGAGCAGCTGGAAGATCGCATGATCTATGCCGGCCGTATGCTCGATGCGTCGAGCTTCAAGGCCGGGCTCAACCCGCTGGTGGCTGCGGCTTGGGC GGTGTTGTCCGAGATCGTGGCGCTCAGGGTCTGCTCTGGTCGCGAAGACCTGGGCACGCTCAACGACCGATTGTCATTGGCGGTGACTCAATTCGAAACC CGCGCCTTGCAGGGCGGTGTTGAAAGCAGCCAAGTCATGTCGGCGCGTTATGTGTTGTGCAGTGTGATCGATGAGGCGGTTGTTACTACGGCGTGGGGGG CACAGAGTGAATGGTCGAAGGTGAGCCTGTTGAGCCGCTTTCATAACGAAACTTTCGGCGGCGAAAAAGTTTTCCAACTGCTGGAGCGTCTATCACGCGA CCCGGTGAAGCACCTGCCGATGCTGGAGCTGCTTTACCTGTGCCTATCCCTGGGGTTCGAGGGCAAATACCGAGTGATGGAGCGCGGCATGTCGCAACTG GAAGGTGTTCGCGATGCCTTGTATCGCCAGATCCGGCACGTACGCGGGGAGCCGTCGCCGGCGCCACCCGTGCCCGCGATGCACGGGGCGAGCCGGCGTA CGGGGTTGTGCGTTGTTCCCGTTACCTGGTTAGTCATCTTCACCCTGGTTTGCTTGCTGGCAATGTACACAGGATTTGCCTGGGTGCTGAGCACGGAGCG CGCGAACGCGCTGCAACCGCTTCAATTTTCGGCGTCGGATTTGATCCGCACGTCCTTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGCAGGGAGCAAAGAATGAGCGCATTCTTCAAGGGTGTGGGCGCCGTGCTGGGCCGGTTTTGGGTTTGGAGCATGTTGCTGGCGCTTTCGTGTGCGGCA GTGGTGTGGTTTTGGGGGCCGCTGTTGGCGGTGAATGATCAGCCTGTTTGGCAGGGCGCGACGTCTCGCCTGGTCACCATCAGCGTCGTGTTCCTGCTTT GGGGGTTGGTGATGGCCCTTGCCCGCGGTGGTCGTGCCGCCCGGCGTCCACGGTCTGAGCGCCAGCCCCGCCAGCAGCCGTCGACACGGGTGGAGAACGA ATACCGCTGCGTACGCACTCGGTTCAAGGATGCGGTTCACCTGCTGAAAACCTCCAGCCGTTATGGAGAGCGCAGCGCGCGTTGGCGCCATGAGTTGCCC TGGTACCTGTTGATGGGTGAGCCGGGCAGTGGCAAGACGCAGCTGCTGGCGGCAGCCGGCTTGCAGTTATCGCCTGAACACGCTGACAGGCGACCGACGA
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| Amino Acid Sequence |
>type VI secretion protein TssL2
MDSEYTQDERTVLLDREGHGPAQGPLTDFPSPPRYEQLEDRMIYAGRMLDASSFKAGLNPLVAAAWAVLSEIVALRVCSGREDLGTLNDRLSLAVTQFET RALQGGVESSQVMSARYVLCSVIDEAVVTTAWGAQSEWSKVSLLSRFHNETFGGEKVFQLLERLSRDPVKHLPMLELLYLCLSLGFEGKYRVMERGMSQL EGVRDALYRQIRHVRGEPSPAPPVPAMHGASRRTGLCVVPVTWLVIFTLVCLLAMYTGFAWVLSTERANALQPLQFSASDLIRTSL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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