Strain | Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TCGTTGGCCGCGACCCGTGAATACGCCGGATCGAAGGGGGACAAAGCCGCCAAGGTGATGGTCGCGATGCTCAATGATGCGACCTATGCGCGGGCTGGGC GGGTGGACTTTCTGGCCAACGCGGCCGACCGCAAGACCGGCACCGTGCGCGTGCGTGCGGTGGTCGACAACCCGGACGGGCGCCTGACCCCCGGGCTGTT CGCCAAGGTCAAGCTGGACACCGGCGCGGCACAAACGCGGGTGTTGATTGCCGACCATTCCATCGGCACCGACCAGGGCCGGCGCTATGTGCTGGTGGTC GGTGACAGCGACAAGACCCAATACCGCCCGGTCGAATTGGGCCCGATGGCTGAAGGCCTGCGGGTGATCGAGCAGGGCCTGCAACCGGGCGAGCGTATTG TCGTCAAAGGGCTGGTGCGCCCGGGCATGACGGTGACGCCGCTGGCCGCCAGCATCGAGGGCAAGCCGCTTGAGGCACCGCTGACCGTGGGAGGCGTGCA
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DNA Sequence for Gene |
>PseBG33_2517
|mexQ
ATGAGCTTTCCACGGTTCTTTATTGATCGGCCCATCTTCGCCATCGTCCTGTCGGTGTTGATGATGATCGGCGGCCTTGTCGCCTTCTTCCACCTGCCGC TGAGCGAATACCCCGCGGTCACGCCACCGACCGTGCAAGTCACCGCGAATTATCCTGGGGCCAACCCGCAAGTGATTGCGGAGACGGTGGCGGCGCCACT GGAACAGGTGATTACCGGCGTTGAGGGCATGCTCTACATGACCTCGCAGTCGGCCACCGATGGCCGCATGATCCTGACGGCGACCTTCGCCCAGGGCACC AATGCCGACATGGCGCAGATCCAGGTGCAAAACCGCGTCTCGCGTGCGTTGCCGCGTTTGCCCGAAGAGGTACAGCGTCTTGGTGTGGTCACGCAGAAGA CCTCGCCGGACATCCTCATGGTGGTCCACCTGCTGTCTCCCGACCAACGTTATGACCCGCTGTACATCTCCAACTACGCCTACTTGCAGGTGCGCGATGA GCTGTCGCGCATACCGGGGATCAACGACGTGCTGGTGTGGGGCGCGGGTGAATACAGCATGAGGCTGTGGCTCGACCCGGACCTGATCGCTGCCCGAGGC TTGACCGCCGGTGATGTGATCGGCGCCGTACGCGAGCAGAACGTGCAAGTGGCGGCGGGCTCGGTCGGCCAGTCACCTGATTCCAATGCGGCCTTCCAAG TCACGGTCAACACCCTCGGGCGCCTGACGGACGAAGCGCAGTTCGGCGACATCATCATCCGCACCGGCGATAACGGCCAGGTCACGCGCCTGCGCGATGT GGCCCGTATCGAGATGGGCGCCGATGCCTATGCGCTGCGCAGCCTGTTGGATGGCGAGCCGGCCGTGGCTTTGCAGATCATCCAGAGCCCAGGGGCCAAT GCGCTCGATGTGGCGCAGGCGGTGCGTGACACCATGCAGCGCCTGCAGGCCAACTTTCCCGAAGGGCTGGTGTCGCGGATAGCTTACGACCCGACCGTGT TTGTGCGCGCTTCGCTGGAGTCAGTCGCCATCACGCTGATGGAAGCGATCCTGCTGGTGGTCATCGTGGTGGTGGTGTTCCTGCGTAACTGGCGCGCATC GCTGATCCCGTTGATGGCTGTGCCGGTGTCGATCATTGGCACCTTTGCGGTCATGCATCTGATGGGGTTTTCCCTCAATACCTTGTCGTTGTTCGGGCTG GTGTTGTCGATCGGCATCGTGGTCGACGATGCCATCGTGGTGGTCGAGAATGTCGAGCGGCATATCGAGAACGGCGAGGAGCCCACCGAGGCAGCGCGCA AGGCAATGGGGGAGGTCACCGGCCCGATCATCGCCATTACCTCGGTGCTGGCGGCGGTGTTTATTCCCACAGCGTTTCTCAGTGGCCTGCAGGGTGAGTT CTACCGGCAATTTGCGCTGACCATCGCGATTTCCACGATCCTCTCGGCGGTCAACTCGTTGACCCTCAGCCCGGCGCTGGCCGGCCTGTTGCTGCGCCCG CGCAGCGCCGCCGTGGCGCACGATCCGCGCAGCCTGCGCGGTCGTGCTGCGCATTGGGTGCAGGTGCTGAGCCGACCGTTCCAGCGGGCGCCGCAGGCGT ATGGCAACTCGGTGCGCAAGGTCGTCGGCCGCCGCGGGGTGGCGCTGGTCGCCTACGGCGGATTACTGGCGCTGACCTGGTTCGGCTTCAACGCTGTACC GGCGGGCTTTGTGCCGATGCAAGACAAGTACTACCTGGTGGGTATCGCCCAATTGCCCAATTCGGCCTCGCTGGAGCGTACCGATGCGGTGGTGCGGCAG ATGTCGAAGATCGCCCTGGATGAACCGGGTGTAGAAAGCGTGGTGGCGTTCCCGGGGTTATCGGTCAACGGCTTCGTCAATGTGCCGAATGCCGCGGTGA TGTTTGTCATGCTCGATCCATTCAAGGAACGAACCTCGTCCGATATGTCCGCGGTCGCCATCGCCGGGCGCCTGCAAGCCAGGTTCGCGAGCATCCCTGA CGGTTTCCTCGGCGTCTTCCCGCCGCCGCCGGTGCCCGGCCTTGGGGTGACCGGTGGCTTTAAGTTACAGGTCGAGGACCGTGGCGGGGTTGGGCTTGAG GCATTGGTGCAGCAGACCCAGGTATTGATGACCAAAGCCACTGAGTCGGGCCAGGTCGCCGGATTGATGACCAGCCTGGACGTCAACGCACCGCAGTTGA ACGTCGACATCGATCGCACCCAGGTCAAGAGCCAGGGCGTGCGTCTGGCGGATGTGTTCGAGTCCTTGCAGGTCTATCTCGGGTCGCTGTATGTCAACGA CTTCAACCGTTTCGGCCGGACCTACAAGGTGACCGCCCAGGCTGATGCCGACCATCGGATGCAGACCGAAGCCATCGGCCGCCTGCAAGTGCGCAATGCG GCCGGGAACATGCTGCCGTTGTCGGCGTTTGTCACCGTCACTCCGGGTTCCGGCCCGGACCGGGTGATTCACTACAACGGCTACCCTTCGGCGGATATCT CCGGTGGGGCGATGCCTGGGGTCAGCTCGGGGCAAGCTGTTGCGCTGATGGAGCGGCTGGCGCAGGAGGTACTGCCCGAAGGCGTGACCTATGAATGGAC GGATTTGACCTACCAGCAAAAACTCGCCGGATCATCGGCGCTGTTTATTTTCCCGCTGTGTGTGTTGCTGGCGTACCTGATCCTCGCCGCGCAGTACAAC AGTTGGTTGTTGCCGCTGGCGGTCTTGCTGATCGTGCCCATGTGCCTGCTCAGCGCGATCATCGGCGTGTGGCTGGTGGACGGTGACAACAACGTGTTCG TGCAGATCGGGCTGGTGGTGCTGGTCGGGCTGGCGGCGAAGAACGCCATTTTGATCGTCGAGTTTGCCCGCAGCCTCGAAGCCGAAGGTGCGAGCCCGTT GGAGGCGGTTATCCACGCGTGCCAACTGCGCTTGCGACCGATCCTGATGACGTCGCTTGCGTTCATCGCCGGCGTGGTACCGCTGGTATTGGCCAGTGGC GCCGGGGCCGAAATGCGTCATGCCATGGGGGTTGCAGTGTTTGCCGGGATGTTGGGGGTGACGCTGTTCGGCCTGTTCCTCACGCCGGTGTTCTACGTGG TGATGCGCAGCCTGGCGCTGCGCTTGCAGCGTCAGGGTTCGAATCCGAAGTTGCAGCTGGAGGAGCGCGCATCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
AACGGTCTTTTCCACTTTTTATGTTGCCGTTGCTGCTGGTGGCCGGCTGCGCTGCGGTAGGGCCTGACTATTCCGCGCCGGTGCTGCCCGCCGCGCACAG GCCGGCAAGCTTCGGTGCGCCCGTTGCAGGTCTGGGCAGCGGCGAGGTCGAGGTGCAGTGGTGGCAAGTGTTCGACGAGCCGGCACTCAGTCAATTGATC CAGCAGGCGCTGGCGGCCAACCACGACATCGGCATCGCCGCCGTACGCCTGGATGAAGCCAAGGCGATGCTGCGCGAGAGCCGCCAAGGGTTTCTGCCCA GTGGCGGTGCCGCCCTCGGTTATGAGCACCGACGGCGCAGTGAAGTCGAGACACCGTTGGGCCAGGAACGCTCAATTGAAACCACCCGCGCGGCACTGGA TGCGGCCTGGGAAATCGACCTGTTTGGGCGCGTCCGCCGTTCGGTAGAGGCAGCGCAAGCGCAGGCGGGGTCGCGCCAGGCATTGCTGCGCAGTGTACAG
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Amino Acid Sequence |
>transporter
MSFPRFFIDRPIFAIVLSVLMMIGGLVAFFHLPLSEYPAVTPPTVQVTANYPGANPQVIAETVAAPLEQVITGVEGMLYMTSQSATDGRMILTATFAQGT NADMAQIQVQNRVSRALPRLPEEVQRLGVVTQKTSPDILMVVHLLSPDQRYDPLYISNYAYLQVRDELSRIPGINDVLVWGAGEYSMRLWLDPDLIAARG LTAGDVIGAVREQNVQVAAGSVGQSPDSNAAFQVTVNTLGRLTDEAQFGDIIIRTGDNGQVTRLRDVARIEMGADAYALRSLLDGEPAVALQIIQSPGAN ALDVAQAVRDTMQRLQANFPEGLVSRIAYDPTVFVRASLESVAITLMEAILLVVIVVVVFLRNWRASLIPLMAVPVSIIGTFAVMHLMGFSLNTLSLFGL VLSIGIVVDDAIVVVENVERHIENGEEPTEAARKAMGEVTGPIIAITSVLAAVFIPTAFLSGLQGEFYRQFALTIAISTILSAVNSLTLSPALAGLLLRP RSAAVAHDPRSLRGRAAHWVQVLSRPFQRAPQAYGNSVRKVVGRRGVALVAYGGLLALTWFGFNAVPAGFVPMQDKYYLVGIAQLPNSASLERTDAVVRQ MSKIALDEPGVESVVAFPGLSVNGFVNVPNAAVMFVMLDPFKERTSSDMSAVAIAGRLQARFASIPDGFLGVFPPPPVPGLGVTGGFKLQVEDRGGVGLE ALVQQTQVLMTKATESGQVAGLMTSLDVNAPQLNVDIDRTQVKSQGVRLADVFESLQVYLGSLYVNDFNRFGRTYKVTAQADADHRMQTEAIGRLQVRNA AGNMLPLSAFVTVTPGSGPDRVIHYNGYPSADISGGAMPGVSSGQAVALMERLAQEVLPEGVTYEWTDLTYQQKLAGSSALFIFPLCVLLAYLILAAQYN SWLLPLAVLLIVPMCLLSAIIGVWLVDGDNNVFVQIGLVVLVGLAAKNAILIVEFARSLEAEGASPLEAVIHACQLRLRPILMTSLAFIAGVVPLVLASG AGAEMRHAMGVAVFAGMLGVTLFGLFLTPVFYVVMRSLALRLQRQGSNPKLQLEERAS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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