Pseudomonas sp. CFT9, CFT9_23624
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFT9 soap_scaffs_T9.Contig59, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGATCTTCCTGTCGGTGTTCAACGCCATCGTTGCCATCGTGATCCAGATTGGCCGGGTGGTGTTCAGCAGCGGCCGCGATGCGTTGTGGACGCCTGGCAT CAACAAGCTGTTCACGCGTATTCACCCGCGCTGGGACTCACCGTGGCTGGCGACGCTGTTTCTGGCGATCCCTTCGGCGCTGTTGAGCTTCAGCTCCAAC CTGGCCGACCTGACCTCGTTCAGCGTTCTGCTGATCATGCTGGTGTACCTGGTGGTGGCGCTGAGCGCGCTGATGAGCCGGGTGCTGCTGCGTGATCGCG AGCATCCCTATCGCATGCCGTTATGGCCGCTGCCGGCATTGCTGGCGGTGCTCGGTGCCGGTTACCTGCTGGTCACCTTGATCCTGGAGGCCTCGGTACG CGACATCATGATCATCATCGGCTTGCTGGCCCTGTCGGTGATTTTGTATTGCATCAGTGGCCGGTTGAGTCCGGCGTTTCAGAAATTGTAAGGAGTGGGT
|
|
| DNA Sequence for Gene |
>CFT9_23624
ATGCGTGCACGTCAATTGGGCATCACGTTGGGGCTGGGCATGCCCGGCGAATTGAATGCCATCACCGATGTTCCCGGGGTTCGCGTCGGTCATGCCACGC TCAAGGCACAGGTCGACGGCAAGCAGGTGCGCACCGGCGTTACGCTGATCCAGCCGCGTGCCGGGGAAGCGCGACATCAACCGTGTTTTGCCGGCTATCA CGTGCTCAACGGCAATGGCGACGCCACGGGGCTTGAATGGATCAGCGAGGCGGGGCTGCTGACCACGCCGATGGCCATTACCAACACCCACAGTATCGGG GTGGTGCGCGACAGCCTGATCGCCCTGGAGCGCGAGCGTCTGGCGGACCCGGCGGTGTACTGGTGCATGCCGGTGGTCATGGAAACTTATGACGGCCTGC TCAACGACATCTGGGGCCAGCATGTTCGCCCTGAGCATGTGCGCCAGGCCCTGGACCAGGCTGAAAGCGGCCCGGTGCAGGAAGGCGCGGTAGGCGGTGG CACCGGCATGATTTGCCACGAGTTCAAGGGCGGCATCGGCACTGCGTCACGGCGCTTGCCAACGGAGCAGGGCGGCTGGACCGTGGGCGTACTGGTGCAG GCCAACCATGGCAAGCGCCAGGAGCTGCGGGTCGATGGTTACCCGGTGGGCCGTCATTTGACGGACATTGCTTCGCCCTTTGCCGAGCGTGGCACTCCCG GCATGGGCTCCATCGTGGTGATCATCGCCACGGACGCCCCCTTGCTGCCGCACCAATGCCAGCGCCTGGCACAGCGCGCGTCCATTGGCATTGCGCGCAC CGGTGGCGGCACCGAGGATTCCAGCGGCGACCTGTTCCTGGCGTTTGCCACCGGTAACCGTGATTTGCCGCCGGCCGACTATGGGCGCAAGGACCTGCCG CTCAGCACCGGCTTGCAGATGGTCAACAACGACCATATTTCGCCGCTGTTCAGCGCGGCGGCAGAGGCGGTGGAGGAGGCGATCATCAATGCCATTCTGG CAGGTGAAGACATGACCACTCAAGACGGCGTCAAGGTGCCGGGCCTGGCTGGCGAAACCCTCTTGGCAGCCATGCAACAGTGTGGCTGGAGTATGTCCCG GTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGGGGGACAGCGCACTTTAATAGTGCGAATAGTGGCTCTTTAATGTTGCTAATGACACCGTGACAATATATTGGATCCATTAATCAAGTGGGCCGCTCAC TTAGAGTGGCTTTACTTGTATTTAATATTTAAATAGTGGTGTGCGCCGATTCGGCCACACAAACGCAACGGCCCCCAATAAACACTGCGTGCGACTTCTT CATCTTGAACCTGCGTCACAAGTGTGCGATGGAAATAGATGTAGACGAAAGATTTCAAGTTGTGTCAGTTTTCTTACGCCTTCAAAAGAGGTGAGTGATA GGACTATCCTCGCCCGCGAGGTTCCTATCGAACAAAGACTGATGCACTTGCAAACAAGGAAGTACGTTTATGTCAAAAGTAAAAGACAAAGCTATTGTAT CTGCCGCGCAAGCCAGCACTGCTTACTCGCAAATCGATAGCTTCAGCCATTTGTATGACCGTGGCGGCAACCTCACGGTCAATGGCAAACCGTCCTACAC
|
|
| Amino Acid Sequence |
>putative family S58 peptidase
MRARQLGITLGLGMPGELNAITDVPGVRVGHATLKAQVDGKQVRTGVTLIQPRAGEARHQPCFAGYHVLNGNGDATGLEWISEAGLLTTPMAITNTHSIG VVRDSLIALERERLADPAVYWCMPVVMETYDGLLNDIWGQHVRPEHVRQALDQAESGPVQEGAVGGGTGMICHEFKGGIGTASRRLPTEQGGWTVGVLVQ ANHGKRQELRVDGYPVGRHLTDIASPFAERGTPGMGSIVVIIATDAPLLPHQCQRLAQRASIGIARTGGGTEDSSGDLFLAFATGNRDLPPADYGRKDLP LSTGLQMVNNDHISPLFSAAAEAVEEAIINAILAGEDMTTQDGVKVPGLAGETLLAAMQQCGWSMSR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|