Pseudomonas veronii 1YdBTEX2, H736_RS0130555
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas veronii 1YdBTEX2 Contig63, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGCGCATCTCGGCAGCGGCCTTGTTGGTGAAGGTCACCGACAGGATCGAATGCGGGGAGGCGTTCTCGACCTGGATCAACCAGGCGATACGGTGTACCA GCACTCGGGTTTTACCGGAGCCAGCACCGGCCAGGACCAACTGACGGCCAACGGGGGCCGCTACGGCCTGGCGTTGGGCATCGTTGAGGGAATTCAGCAA AAGGGAGAGATCATCGCGCATCGGCGCATTCTATGGCCCGCGGGGGAGTGGGGCAAATCCCATTGGCGGATGGCCGACGGAAAACCTGCGGCGCGTGCCG GGGCGGGCACGCGTTCCGGCGGGGCTGATGACTGGTTGGTCATGGGCCACAGGCCGCGCCGCGTCTCGCTCAAGCCGTCTGGCCCCGAGGTTTGCGCGGT ACGCCTCGCTGGTTTTTATGACGCGCAGCAGTTTGGCCCGAGCGCTTGCTTGTGTATGCTCCGTCGACGTTTCGGGCTCACCATTATAAGAACACTGCCT
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| DNA Sequence for Gene |
>H736_RS0130555
ATGACCCTCAGCACCGACCTGTTTAGCCCCATGGCGGCGCCCGCGCAGGTTATCCGAAAACACTACGCTACCGAGATGGCGGTCGAACGCACGCGCCTGC TCTACCAGGGTTCGCTGCTGCCGACCTTATTGATGCTGGTCAACGGCCTGGTCTGCGCCTGGTTGATCTGGAACCCCAAACATTACCTGCTCGACAGCAT CTGGCTGGTCTGGCTGCTGGCGCTGGTCGCGCTGCGCGTGATCCAGGTGGCCGCCTTCGACTCGGCGATGCCCAGCCGCCAGGCGCAACCGATCTGGCGG CGCATGTTCATGCTCGGCTCGGCGGTCAGCGGCCTGACCCTGGCCATCGCCGCCATCGCCCTGGTGCCGGCAGACAGCTTTACGCAGCAAGCCTGGGTGT TCGGCCTGATCGGTGCGGCGACGTTGTCCGCCAGCGTTGCCTATGCGGTGAGCCTGCCGGCGTTCCTGTCATTCGCGCTGCCGTGCCTGGTGCCGGCCAT TGTCTATCTCTTCTGGAACGGCGCCGCGCAGCAACAGGGTTGGGGTGTACTCGGCCTGATCCTGCTGGCGTCCTTGAGTGTGGTGGCGTGGCAGGTCAAC CGCCTGATCCAGCACGGGCTGTTGCGGCGCTTTCAGAACCAGGCGCTGATCGAGCATCTGCAACAGGCACAGCAGCGCAGTGAACAGTTGAATCAGGAGC TGGTGCGCGAAGTCGAGCAACGCCGCCAGGTCGAGCAGGAACTGCGCGAAGCGCAAATCGGCCTGCAGGACCGCGTGGCGCAACGCAGCCAGGAGCTGGA CGCCGCCAGCCTGGCCCTGAATAAAAGCGAAGCGCGCCTGGCGATGGCCCTGCAAGCCAGCGAACTGGGCCTGTGGGACTGGAATCTGCAAACCGACGAG GTCCACCACACCCAGCTCAAGGAACTGTTCGGCCTGGAGCCCGAGTTCGTCACGGCGATGCTCAGCCACCTCAAGCCGCGCCTGCACCCCGACGACTTGC CGCTGCTCAAGCGTGCCCTGGTGGAGCATCTCAAGGGCCGCAGCGAGGACTATCTGGTGGAATACCGGGTGCGCCATGGCGATGGCCACTGGGTGTGGAT CGAAGACCGCGGCCGCGCCGTGGAGCGTGCGCCCAGCGGTCGCGTGACGCGCATGCTCGGCACGCGTCGTGACATCAGCGCAAGCAAGGCGCTGGAGGAA CAGCAACGCCTGGCCTCGACCGTATTCGAAGCGGCCAGCGAAGGCATTGTGATCCTCGACCCGGACTACGCGCTGCTCGCCGTCAACCAGGCCTTCAGTC GCGTCACCGGCTTTGATATCGACGACATGCTCGGGCGCAATGTGGTGGAGTTGCCGTGCAGCCGCGACGCCCGGCGGCACTTTCCGCTGATCCGCCAGGC GCTGCTCAGTCACGGTACCTGGCAGGGCGAGCTGGTGGAAACGCGTAAGAACGGCGAACTGTACCCGCAGTGGCTGCAACTGAACGTGGTACGCGATATT CGAGGAAACGTCAGCCATATCGTAGGCTTCTTCGCCGATCTCTCGGCGCGGCGCGAATCCGAGGAGCGCATGCGCTACCTCACGCACTATGACGAGTTGA CCGGCCTGGCCAACCGCTCGCTGTTTCGCGAGCGGCTGCGCGAAGCGCATCAGCGGGTGCGCCAGGGCGGGCGCAGCCTGGCGTTGCTGCATATCAACCT GGACCGTTTCAAGTTGCTCAACGACAGCCTGGGCCATGACGTCGCCGACCAATTGCTGCAAAAAATGGCGCGACGTTTGATCAATGCCCTGCCCGAGGCC GACACCATCGCGCGTTTGTCCGGGGATGAGTTCGCCGTGCTTTTCGATGCCTACGGCAACCTCTCAAGCCTGGCGCGGGTGGCCACGCGCCTGCTGGCCA AGTTGCGCGTGCCGGTGACGGTGGAAGGGCATGAATTGGTGGTCAGCGCCTCGATGGGCGTCAGCCTGCTTCCGGATAATGCGCGGGAAATTTCGGCGTT GGTCAGCCAGGCGAACATGGCCATGCAACACGCCAAACACCTGGGCGGGAATAATTTCCAGTTCTACACCGACAGCCTGCAAGCCAGCACCCTGGAGCGT TTGCAGCTGGAAAACCAGCTGCGCAAGGCCATCGACGAGCGCCAGCTGTCGGTGTTCTACCAACCGAAATTGTGCCTGGCCAGCGGCAAACTGAACGCCG CCGAGGCGTTGATTCGTTGGGAGCATCCGCAGTGGGGCACGGTGCCGCCAAGCGACTTCATCGGCCTGGCCGAAGAAACCGGCCTGATCGTGCCGTTGGG CGAATTCGTCCTGCGCCAGGCCTGCTGGCAGGCCTGTGAGTGGCAGCGTCAGGGGCTGGCGCCGATACGCGTGTCGGTGAACCTGTCGGTGCATCAACTG CGTCAAGGCAAGCTGGTCAGCCTGGTGCGCCAGGTGCTGGAAGAAACCGGCCTGGACCCGCAATACCTGGAGCTGGAGCTGACCGAAAGCCAGCTGCTCG ACAGTGTCGAGCACATCATCGCCACCTTCCAGCAACTGCGCGACCTGGGGGTGAAGTTGGCCATCGACGATTTTGGCACCGGCTATTCGTCTCTCAGTTA CCTCAAGCGCATTCCCGTGGACTACGTGAAGATCGACCAGACCTTCATCCGCGGCCTCGGCCAGGGGCGGGAAGACGCGGCCATTACCCGTGCGATCATC GCCATGGCCCACGGTTTGGCGCTCAAGGTGGTGGCCGAAGGCGTGGAAGATCAGCAGCAGCTGGATTTCCTGCGCCGGGAGCGTTGCGATGAGGTGCAGG GCTACTTGATCAGCCGGCCGATGAAGGCCGAAGGGCTGGCAGATTTGTTACGGAAGAATGCGGATTTTTCCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGACGTGCCTTCAGCCTTTGTGGCTACAACTTGGCTGCCCTTAGATTCAAAGGGCAGCAGGGCGATTTAGTGATGCATCGGACGGGCAAAACGGCAATTC TTGTAGTATAACTACAAGCTTGCTACATCCCTGGCGTCTGCCAATAACAAGAGTCCTGTCCTTTGAACCTGTTGCAACATATCGCCCAGTCGCGCCACCT GTTACGCAAATCGGAACTCAAGGTTGCCGACCACGTGCTGCTTGACCCTGCGGCCGTAATGCACAGTTCCATGGCCGACCTGGCCCACAGCGTGGGCATC AGTGAGCCGACCATCGTGCGCTTCTGCCGTGCCATCGGTTGTTCCGGCTTCCAGGACCTGAAACTCAAGCTGGCCCAAAGCCTGGCCGCCGGCGCGAGCT TCGGGCAGTTTGCGATTCACGAAGACGATTCCGTCGCCGACTACAGCCTCAAGATCTTCGACACCACGCTGCACACCCTGATGGAAGTGCGCGAGAAGCT
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| Amino Acid Sequence |
>diguanylate cyclase
MTLSTDLFSPMAAPAQVIRKHYATEMAVERTRLLYQGSLLPTLLMLVNGLVCAWLIWNPKHYLLDSIWLVWLLALVALRVIQVAAFDSAMPSRQAQPIWR RMFMLGSAVSGLTLAIAAIALVPADSFTQQAWVFGLIGAATLSASVAYAVSLPAFLSFALPCLVPAIVYLFWNGAAQQQGWGVLGLILLASLSVVAWQVN RLIQHGLLRRFQNQALIEHLQQAQQRSEQLNQELVREVEQRRQVEQELREAQIGLQDRVAQRSQELDAASLALNKSEARLAMALQASELGLWDWNLQTDE VHHTQLKELFGLEPEFVTAMLSHLKPRLHPDDLPLLKRALVEHLKGRSEDYLVEYRVRHGDGHWVWIEDRGRAVERAPSGRVTRMLGTRRDISASKALEE QQRLASTVFEAASEGIVILDPDYALLAVNQAFSRVTGFDIDDMLGRNVVELPCSRDARRHFPLIRQALLSHGTWQGELVETRKNGELYPQWLQLNVVRDI RGNVSHIVGFFADLSARRESEERMRYLTHYDELTGLANRSLFRERLREAHQRVRQGGRSLALLHINLDRFKLLNDSLGHDVADQLLQKMARRLINALPEA DTIARLSGDEFAVLFDAYGNLSSLARVATRLLAKLRVPVTVEGHELVVSASMGVSLLPDNAREISALVSQANMAMQHAKHLGGNNFQFYTDSLQASTLER LQLENQLRKAIDERQLSVFYQPKLCLASGKLNAAEALIRWEHPQWGTVPPSDFIGLAEETGLIVPLGEFVLRQACWQACEWQRQGLAPIRVSVNLSVHQL RQGKLVSLVRQVLEETGLDPQYLELELTESQLLDSVEHIIATFQQLRDLGVKLAIDDFGTGYSSLSYLKRIPVDYVKIDQTFIRGLGQGREDAAITRAII AMAHGLALKVVAEGVEDQQQLDFLRRERCDEVQGYLISRPMKAEGLADLLRKNADFS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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