Pseudomonas sp. PAMC 25886, MUM_RS0109950
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004506, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGATGAACTTCGTCGACAACCAGGTCAACCCGGCCACCGGCACCATTCGCGGTCGCGCCGTGTTCGACAACAGCAAGGGTGAATACACCCCTGGCCTGTA TGCCCGCCTGAAGCTGGTCGGCAGCGGCACCTACTCCGCCGTGCTGATCAACGATGAAGCCGTGGGCACTGACCTTGGCAAGAAGTTCGTACTGGTGATG GACGGCGACAAGCCCGCCTATCGCGCCGTGGAACTGGGGCCGAAGATCGAAGGCTTGCGCATCGTGCGCAGCGGCCTGAACAAGGACGACACGATCATCG TCAAGGGCCTGCAGCGCGTTCGCCCGGGGTCGCCGGTTGCGCCGGAAACCATCCCGATGGCCAGCAAGGAAACCCTCGCCGCCTTGGCACAACAACGACA AGCGCTTGAAGCCAGCAACCTGGAGCAAGTGGCGCCGGATAAAGCCGCGCCCAAGCTCGCCAGTGTCGCGACTCCACGCGGTTAAGGGATACAACTCAAG
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| DNA Sequence for Gene |
>MUM_RS0109950
ATGAATTTTTCCAAGTTCTTCATTTCGCGGCCGATCTTCGCAGCGGTGCTCTCGCTGCTGATCCTGATCGCGGGTGCGATCTCGCTGTTCCAGCTGCCGA TCAGCGAATACCCGGAAGTGGTGCCGCCGACCGTCGTGGTACGTGCGAACTTCCCGGGCGCCAACCCCAAGGTCATCGGTGAAACCGTAGCCGCCCCCCT GGAGCAAGCGATCACCGGCGTCGAGAACATGCTGTACATGTCCTCGCAGTCGACCGCCGACGGCAAGCTGACCCTGACCATCACCTTCGCCCTGGGCACC GACCTGGACAACGCGCAGGTACAGGTACAGAACCGTGTCACCCGGACTCAGCCAAAGCTGCCTGAGGAAGTGACGCGTATCGGTATTACCGTGGACAAGG CCTCCCCCGACCTGACCATGGTTGTGCACTTGACCTCCCCGGACAAGCGCTACGACATGCTCTACCTGTCCAACTATGCCTTGCTCAACGTAAAGGATGA GCTGGCACGCCTGGGCGGCGTGGGTGACGTGCAACTGTTCGGCATGGGCGACTACTCCCTGCGTGTTTGGCTGGACCCGAACAAGACCGCTTCGCGCAAC CTGACCGCCACGGATGTGGTGACCGCGATTCGCGAGCAGAACCGTCAAGTGGCCGCCGGTGCCCTGGGTGCGCAACCTGCACCGAATGCCACCAGCTTCC AGTTGTCGGTGAACACCCAGGGCCGCCTGGTCACCGAGGAAGAGTTCGAGAACATCATTATCCGCTCCGGCGATAACGGTGAGATCACCCGCCTCAAAGA CATCGCACGGGTTGAGCTGGGTTCCAGCCAATACGCCCTGCGCTCGCTGCTCAACAACCAGCCGGCGGTGGCGATCCCGATCTTCCAGCGCCCGGGTTCC AACGCAATCCAGATCTCCAACGAAGTACGCGACAAGATGGCGGAGCTGAAAAAGAGCTTCCCGGAAGGCATGGATTTCAGCATCGTCTATGACCCGACCA TCTTCGTGCGTGGCTCCATCGAAGCGGTGGTACACACGCTCTTCGAGGCACTGATCCTCGTGGTGCTGGTGGTGATCCTGTTCCTGCAAACCTGGCGCGC CTCGATCATTCCGTTGGTGGCGGTGCCGGTATCGTTGATCGGTACGTTTGCGGTGATGCACCTGTTCGGCTTCTCACTCAACGCACTGTCACTGTTCGGC CTGGTACTCGCCATCGGTATCGTGGTGGACGACGCCATCGTGGTGGTGGAGAACGTCGAGCGGAACATCGAGCTTGGACTGGAACCGTTCCCGGCCACTG AAAAGGCCATGAGCGAAGTGACCGGCCCGATCATCGCGACCGCGTTGGTACTGTGTGCGGTGTTCATTCCAGCGGCCTTTATCAGCGGCTTGACCGGGCA GTTCTATAAGCAGTTCGCCTTGACCATTGCGATCTCGACGGTGATTTCGGCGTTCAACTCGCTGACCTTGTCGCCGGCACTGGCCGCGGTATTGCTTAAA GGTCACAACGCACCGAAAGACGGCTTCTCCAAGTTCCTCGACAAGTTGCTGGGCGGCTGGTTATTCAAACCGTTCAACCGCTTCTTCGACAAGGCCAGCC ATGGTTACGTCGGCACTGTGCGCCGAGTGATTCGCGGCAGTGGTATCGCCCTGTTCCTGTACGCCGGCCTGATGGTCCTGACCTGGCTGGGCTTTGCCCA CACACCTACCGGTTTCGTACCGGCCCAGGACAAGCAATACCTGGTGGCCTTCGCGCAATTGCCGGACGCCGCGAGCCTGGACCGTACCGAAGACGTGATC AAGCGCATGTCCGACATCGCGCTGAAACAGCCAGGCGTGGAAAGTGCCGTAGCGTTCCCGGGCCTGTCGATCAACGGTTTCACCAACAGCCCGAACAGCG GCATCGTGTTCGTGACCTTGAAACCGTTCGATGAGCGTAAAGACCCGAGCATGTCGGCCGGCGCGATTGCCGGTGCACTGAACGGCAAATACAGCAGTAT CCAGGAAGCCTACATGGCGATCTTCCCACCGCCGCCGGTACAGGGCCTGGGTACGATTGGCGGGTTCCGCCTGCAGGTCGAAGACCGTGGCAACCTGGGT TACGACGAGCTGTATAAAGAAGTCCAGAACATCATTACCAAAAGCCGCACCACCCCCGAGTTGTTCGGCCTGTTCACCAGCTACACGGTCAACGTGCCCC AGGTCGATGCCGCCATCGACCGCGAAAAGGCCAAGACCCACGGCGTGGCGATCAGCGACATCTTCGACACCCTGCAGATCTACCTGGGTTCGTTGTATGC CAACGACTTCAACCGCTTCGGCCGGACTTACCAGGTCAACGTGCAGGCTGATCAACAGTTCCGCCTGGATGAAGACCAGATCGGTCAGTTGAAAGTACGT AACAACAAAGGCGAGATGATCCCGCTGGCGACCTTCATCAAGGTCAGCGACACCTCGGGCCCGGACCGCGTGATGCACTACAACGGCTTCATCACTGCAG AGATCAACGGCAACGCCGCACCGGGCTACAGCTCCGGCCAGGCCCAGGCGGCGATCGAGAAACTGTTGAAAGATGAACTGCCCAACGGCATGACCTACGA GTGGACCGACCTGACCTATCAGCAAATCCTCTCGGGCAACACCGCGCTGTTCGTGTTCCCGCTCTGCGTACTGCTGGCGTTCCTGGTACTGGCCGCCCAA TACGAAAGCTGGAGCCTGCCACTGGCGGTGATCCTGATCGTACCGATGACCCTGCTGTCGGCCATCACCGGGGTGATTATCTCCGGCGGCGACAACAACA TCTTTACCCAGATTGGCCTGATCGTACTGGTGGGCCTGGCCTGTAAGAACGCGATTCTGATCGTCGAGTTCGCCAAGGATAAACAGCAGGAAGGCCTCGA CCCGCTCGCCGCGGTACTGGAAGCCTGCCGTCTGCGTCTGCGGCCGATCCTGATGACCTCGTTCGCCTTCATCATGGGTGTGGTGCCTCTGGTGTTGTCC AGCGGTGCCGGTGCCGAGATGCGTCATGCCATGGGTGTGGCGGTGTTCTCCGGGATGATCGGCGTGACCTTCTTCGGTCTGCTGCTGACGCCAGTGTTCT ATGTACTGATCCGCCGGTTTGTTGAGCGCGGTGAGGCCCGCAAAGCGGCCAAGGCCTTGAAGCTGGAGACACAGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGTGAAAGTATTTCTGCCGAGCTTGCTGGTACTGGCGCTGAGCGCCTGTGCCGTGGGCCCGGACTATAAAACCCAGCCACTGGAGGCGGCCAACGTAAC GGCCGCCGCCGACGCCAAGCAGTACGACCACGCGAAGTACGAAGGCATCTGGTGGCAGCAATTCGACGACCCGACCCTCAACCAGTTGGTGACTCAAGCC CTGAACGGCAACCGTGACCTGCGGGTGGCATTTGCCCGCCTGCGGGCCGCCCGGGCGATTCGTGACGACGCCGCCAACGACGTGATGCCGGTGATCACCA GCCGCGTCAGCAGCGACGTGGGCAAAGGCCAGATTCCCGGCCAGACCACCAACCGCGTCAACAGCGAGCGGTATGACCTGGGCCTGGACATGGCCTGGGA AGTGGATTTGTTCGGGCGCATCCGCCGCAACCTGGAAGCCAGCGACGCTGACCAACAGGCAGCCGAAGCCGATCTGTATCAGCTGCAAGTCACCATGATT
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| Amino Acid Sequence |
>transporter
MNFSKFFISRPIFAAVLSLLILIAGAISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETVAAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGT DLDNAQVQVQNRVTRTQPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYALLNVKDELARLGGVGDVQLFGMGDYSLRVWLDPNKTASRN LTATDVVTAIREQNRQVAAGALGAQPAPNATSFQLSVNTQGRLVTEEEFENIIIRSGDNGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGS NAIQISNEVRDKMAELKKSFPEGMDFSIVYDPTIFVRGSIEAVVHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIELGLEPFPATEKAMSEVTGPIIATALVLCAVFIPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK GHNAPKDGFSKFLDKLLGGWLFKPFNRFFDKASHGYVGTVRRVIRGSGIALFLYAGLMVLTWLGFAHTPTGFVPAQDKQYLVAFAQLPDAASLDRTEDVI KRMSDIALKQPGVESAVAFPGLSINGFTNSPNSGIVFVTLKPFDERKDPSMSAGAIAGALNGKYSSIQEAYMAIFPPPPVQGLGTIGGFRLQVEDRGNLG YDELYKEVQNIITKSRTTPELFGLFTSYTVNVPQVDAAIDREKAKTHGVAISDIFDTLQIYLGSLYANDFNRFGRTYQVNVQADQQFRLDEDQIGQLKVR NNKGEMIPLATFIKVSDTSGPDRVMHYNGFITAEINGNAAPGYSSGQAQAAIEKLLKDELPNGMTYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPMTLLSAITGVIISGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDKQQEGLDPLAAVLEACRLRLRPILMTSFAFIMGVVPLVLS SGAGAEMRHAMGVAVFSGMIGVTFFGLLLTPVFYVLIRRFVERGEARKAAKALKLETQQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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