Pseudomonas putida S610, EDP1_3176 (flhA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S610 EDP1.NODE_1732, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCGATGTGATCATCACCAACCCGACCCATTACGCCGTCGCGCTGCAGTACGATCCGGAAAACGGGAATTCGGCCCCCTTGCTGCTGGCCAAGGGCAGC GACTTCATGGCCTTGAAGATTCGCGAGATCGGCGCCGAGCACAAAATCCAGATCCTCGAATCCGCCGCCTTGGCCCGGGCGATCTACTACTCCACCGAGG TGGAGCATGAAATCCCGGCCGGTCTGTACCTGGCGGTGGCTCAGGTGTTGGCGTACGTCTTCCAGATTCGTCAGTACTACGCAGGCAAGGGCAAGCGGCC TGATCCGCTGAAGACCGACTTGCCGATCCCGCCCGATCTGCGCCGCGACAGTTGACCTTGCGCCGGGAGTTGCTGGAATGGCCGCCATAGGGCCAGCACC GGCAATATAAATCCTCCGCCAGACAAAGTTGGAAAGCTTCTTGCAATGGCAGCGCCAGTCGCCTGACAGGCGTCAAAGTTTTGCAAGAAGAGGACTCGCG
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| DNA Sequence for Gene |
>EDP1_3176
|flhA
GTGGATCGCACTCAGTTAATCAGCAACGCTCGCCACAACCTGACCGGTCTCGGTCGGGGCAACCTCGGCGTGCCGCTGTTGCTGCTGGTGATGCTGGCAA TGATGATGTTGCCAATACCACCGTTCCTGCTCGACGTGTTCTTCACCTTCAACATCGCCTTGTCCATCGTGGTGCTGCTGGTGAGCGTGTACGCGCTGCG CCCGCTGGACTTCGCCGCTTTCCCCACCATCCTGCTGGTGGCGACCCTCCTGCGCCTGGCGCTGAACGTGGCGTCTACCCGCGTGGTCATGCTGCACGGC CAGGAAGGACACGGCGCCGCGGGCATGGTGATCCAGGCCTTCGGCGATGTGGTCATCGGCGGCAACTACGTGGTCGGTGCGGTGGTCTTCGCCATCCTCA TGATCATCAACTTCGTGGTGGTGACCAAGGGTGCGGGGCGTATCTCGGAGGTCAGCGCACGCTTTACCCTCGATGCGATGCCGGGCAAGCAGATGGCCAT CGACGCCGACCTGAACGCCGGCCTGATCGACCAAGCGCAGGCCAAGGCGCGCCGCAGCGAAGTCGCTCAGGAAGCTGAGTTCTACGGTTCGATGGACGGT GCCAGCAAGTTCGTGCGCGGTGACGCCATCGCTGGCCTGCTGATCCTGTTCATCAACCTGATCGGTGGCATGCTGATTGGCATGTTGCAGCATGGCATGA GCTTCGGTGATGCCGGCAAGGTGTATGCCCTGCTGACCATCGGTGACGGCCTGGTGGCGCAGTTGCCTTCGCTGCTGCTCTCCACCGCCGCAGCCATCAT GGTCACCCGTGCCTCGGGCTCGGAGGACATGGGCAAGCTGATCAACCGCCAGATGTTCGACTCGCCCCGGGCCCTGGCCGTGTCCGGCGCCATCATGATC GTCATGGGGCTGGTGCCGGGCATGCCGCACCTGGCGTTCCTGAGCCTGGGCTTGATGGCGGGCGGCGGTGCCTACCTGGTGTGGAAAAAACAGCAGAAGA CCAAGGTGCAGGCCCTGCAGGAAGCGCAGCGCCAGCAAGAGCTGCTGCCGTCCCCGCAGCGGGCGGCTGAAACCAAGGAACTGGGCTGGGATGACGTCAC CCCGATCGACATGATCGGCCTCGAGGTGGGTTATCGCTTGATTCCCTTGGTCGACCGCAACCAGGGCGGGCAGCTGCTGGCGCGGATCAAGGGCGTGCGC AAGAAGCTGTCTCAGGACTTGGGCTTTCTCATGCCTACCGTGCACATCCGCGACAACCTGGACCTGCAGCCCAGTGCTTATCGCCTGACGTTGATGGGCG TAATCCTGGCCGAAGCAGAGATCTACCCGGACCGCGAGCTTGCCATCAACCCTGGGCAGGTGTTCGGCAGCCTCAACGGCATCGCGGCCCGCGACCCGGC TTTTGGCCTGGAGGCGGTGTGGATCGACGTCGGTCAGCGCTCCCAGGCTCAGTCGCTTGGTTACACCGTCGTAGACGCCAGTACGGTGGTGGCCACTCAC CTCAACCAGATATTGCAGAAGCATTGCCACGAGCTGATCGGTCACGAAGAAGTGCAGCAACTGTTGCAAGTCTTGTCCAAAGCGTCGCCCAAGCTGGCGG AAGAATTGGTACCGGGCGTCATTTCGCTGTCAGGCCTTCTCAAAGTCCTACAGGCTTTGTTGTCAGAACAGGTGCCAGTGCGCGATATTCGTAGCATTGC CGAATCCATCGCCAACAACGCGGCAAAGAGTCAAGATACCGCCGCTCTGGTCGCGGCGGTGCGCGTCGGATTGTGTCGCGCCATCGTGCAAAGCATTGTT GGCGTTGAGTCCGAGCTGCCTGTGATCACCTTGGAGCCCAGGTTGGAACAGATCTTGCTCAATAGTCTGCAGAGGGCCGGGCAAGGTCAGGAAGACGGAG TGCTTCTTGAGCCGAGCATGGCCGAAAAGCTGCAGCGCTCGCTGATCGAAGCCGCACAGCGCCAGGAGATGCAAGGCCAGCCGGCCATCCTCCTGGTCGC CGGCCCGATCCGCGCCATGTTGTCGCGATTCGGTCGACTGGCCGTACCGAATTTGCATGTGCTGGCGTATCAGGAAATACCGGACAACAAGCAAGTCACC ATCGTTGCCACCGTGGGCCCTAATGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTAGTGGATAATGCAAGTTAAGCGATTCTTCGCCGCTGATATGCGTCAGGCCATGAAGCTGGTCCGCGATGAGCTGGGCGCTGATGCGGCCATCATCGG CAATCGCCGTATCGCAGGCGGGGTCGAACTGACCGCCGCGCTGGACTACAAGCTGTCCGCCCTGGCGCCTCGGGTACCGAACGTCGAACTCGAAGAAGAG CTGCGCAAGACGCACACGCGCATCGCCACGGCCAAGGCCGAGCTCGAGCAGCGCCCGGACAGCAGCGACAGCAATCGCCAATTGTTCGCCGGTCAGTCGC TCACGGCGGCCGAGCCCCTGGTCGAGCCGCACGTTGACGCCCCGCAGCCGGCCACCAGCGCAAGCAGCCAGGCCTCGGTGGACCCGCGCCTGTTCGATGC CATGCGCTCGGAGCTGTCCGGCTTGCGCGAACTGCTGGAAGTGCAGCTGGGGTCGCTGGCCTGGACCCAGCTGCAAGGCAGCAAGCCGCAGCAGGCCACG
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| Amino Acid Sequence |
>flagellar biosynthesis protein FlhA
MDRTQLISNARHNLTGLGRGNLGVPLLLLVMLAMMMLPIPPFLLDVFFTFNIALSIVVLLVSVYALRPLDFAAFPTILLVATLLRLALNVASTRVVMLHG QEGHGAAGMVIQAFGDVVIGGNYVVGAVVFAILMIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQAQAKARRSEVAQEAEFYGSMDG ASKFVRGDAIAGLLILFINLIGGMLIGMLQHGMSFGDAGKVYALLTIGDGLVAQLPSLLLSTAAAIMVTRASGSEDMGKLINRQMFDSPRALAVSGAIMI VMGLVPGMPHLAFLSLGLMAGGGAYLVWKKQQKTKVQALQEAQRQQELLPSPQRAAETKELGWDDVTPIDMIGLEVGYRLIPLVDRNQGGQLLARIKGVR KKLSQDLGFLMPTVHIRDNLDLQPSAYRLTLMGVILAEAEIYPDRELAINPGQVFGSLNGIAARDPAFGLEAVWIDVGQRSQAQSLGYTVVDASTVVATH LNQILQKHCHELIGHEEVQQLLQVLSKASPKLAEELVPGVISLSGLLKVLQALLSEQVPVRDIRSIAESIANNAAKSQDTAALVAAVRVGLCRAIVQSIV GVESELPVITLEPRLEQILLNSLQRAGQGQEDGVLLEPSMAEKLQRSLIEAAQRQEMQGQPAILLVAGPIRAMLSRFGRLAVPNLHVLAYQEIPDNKQVT IVATVGPNG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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