Pseudomonas stutzeri NF13, B381_04172
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri NF13 contig00022, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCCATGTGCTGCACGAAGCGGGTCTTGCCGCAGCCGGTCGGGCCTTTGATCAGCACCGGCATGCCGTGCTGCCAGGCCTGCTGGAACAGCTGCTCTTCG TTGCCTAGCGGTTGGTAGAAGGGCGCGTCAGGCGTGCCGGCGGCAGTCGGGATTTCAATCGCATTCACAGGCAAGTACCTCACGGCAGCAGTTGGTTATT TCCATCGCCAAGCTACCGAGCCCACCGACCCCTCTCAAGCCATCCGCCGGCAAAGCTTGATTGCGATCAAGTCTCGCCTCCGATGCCGACCAATCGAAGC CGATTCCAGACGTTTCGGCCCGTTGCGCCCGCGACAAGGCGTCACGCTCAGGGGGTGCCGGGGGCTCTCTTGATTGTCGTCAAGCGCCTTCGCAACGGCG CTCTCATAGCATCCAAATCGCAAAAAGAAGAAGTCCCCGGGAACTGCCACACCGCCGTAACTAGCAGGAGTCGCCAGAAGCGCTCCCATAGGAGAGAAGG
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| DNA Sequence for Gene |
>B381_04172
ATGAGCAATGTCGGTAAACCTATCCTGGCTGGCCTGATCGCCGGCCTTTCGTTGCTTGGTCTGGCAGTCGCCCAGGCTGCTGCCCCAGAGATGACCGCCG AAGAAAAGGAGGCGGCCAAGCAGATCTATTTCGAACGCTGTGCCGGTTGCCATGGCGTTCTACGTAAAGGAGCCACGGGCAAGAACCTCGAGCCGCACTG GAGCAAGACCGACGCGGACGGCAAGAAGACCGAGGGCGGCACCCTCAACCTGGGCACCAAGCGCCTGGAGAACATCATTGCCTATGGCACTGAGGGCGGG ATGGTCAACTATGACGACATCCTGACCAAGGAAGAGATCAACATGATGGCGCGTTACATCCAGAACACCCCGGATGTGCCGCCGGAGTTCTCCCTGCAGG ACATGAAGGACAGCTGGAAGCTCATCGTTCCGGTTGATCAGCGTCCGAAGAAGCAGCTGAACAACATCAACCTGAAGAACGTGTTCGCCATCACCCTGCG CGATGCCGGCAAGCTGGCCCTGGTCGACGGCGATACCCACACCATCTGGAAGGTGCTGGACACCGGCTACGCGGTACACATCTCGCGTCTGTCCGCTTCC GGCCGTTACGTCTACACCGTTGGCCGCGACGGCCTGACCACCATCATCGACATGTGGTACGAAGAGCCGACCACCGTCGCCACCGTGCGTCTGGGCTCCG ATGCCCGTTCCGTGGACACCTCCAAGTTCAAGGGCTACGAGGACAAGTACCTGATCGGTGGCACCTACTGGCCGCCGCAGTACTCGATCATGGACGGCGA GACCCTGGAGCCGATCAAGGTCGTATCCACCCGCGGTCAGACCGTCGACGGCGAATACCACCCCGAGCCGCGCGTAGCGTCCATCGTCGCTTCGCACATC AAGCCGGAGTGGGTGGTCAACGTGAAGGAAACCGGGCAGATCATCCTGGTCGACTACACCGACCTTAAGAACCTCAAGACCACCACCATCGAGTCGGCCA AGTTCCTCCACGACGGTGGCTGGGACTACTCCAAGCGCTACTTCATGGTCGCTGCCAACGCCTCCAACAAGGTCGCTGCGGTCGATACCAAGACCGGCAA GCTGGCCGCGCTGGTCGACACCGCGAAGATCCCGCACCCGGGTCGCGGCGCCAACTTCATCCATCCGCAGTTCGGCCCGGTCTGGACCACCGGCCACCTG GGTGACGACGTGGTCTCGCTGATCTCCACCGCTTCCGAGGATCCGAAGTACGCCAAGTACAAGGAGCACAACTGGAAGGTGGTGCAGGAACTGAAGATGC CGGGCGCCGGCAACCTGTTCGTCAAGACCCATCCGAAATCGAAGAACCTCTGGGCCGACGCGCCGATGAACCCCGAGCGGGAAGTCGCCGAGTCCGTCTA CGTCTACGACCTGGCCGATCTGAGCAAGGAACCCAAGCGTCTCGACGTCGCCAAGGATTCCGGTCTGCCGGAAAGCAAGGCGATCCGTCGCGCCACCCAT CCCGAGTACAACGAGGCGGGTAACGAGGTGTGGATCTCCCTGTGGGGCGGCAAGACCGACCAGTCCGCGATCGTGATCTACGACGACAAGACGCTGAAGC TGAAGAAGGTGATCACCGACCCGGCAATCGTCACGCCGACCGGCAAGTTCAACGTCTTCAACACCATGCACGACGTGTACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGCCCGAGGATTGCCTGTTAACACCCACCGCGCCTGGCGCGGTGGGTCTGGCAAGGGAACAGATTCCATGACAGATCAAGACGGCAACAAGCAAAAGA AGGGCGGCATCCTTGCGCTACTGCGGCGGCCGAGCGCGCGCTACTCGCTCGGCGGCATTCTAGTGGTGGGCATTGTTGCCGGCATCGTCTTCTGGGGCGG CTTCAACACCGCGCTGGAGGCTACCAACACCGAAACCTTCTGCATCTCCTGTCACGAGATGGGGGACAACGTATACCCCGAGTACAAGGAGACCATTCAC TACGCCAACCGCACCGGCGTTCGCGCAACCTGCCCGGACTGCCATGTGCCGCGCGACTGGACGCACAAGATGGTGCGCAAGGTCGAGGCCTCCAAGGAGC TATGGGGCAAGATCGTCGGCACCATCGACACCGCCGAAAAGTTCGAGGCCAAGCGGCTGACCCTGGCGCGTCGCGAATGGGCCCGGATGCGGGCATCCGA
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| Amino Acid Sequence |
>cytochrome cd1 nitrite reductase
MSNVGKPILAGLIAGLSLLGLAVAQAAAPEMTAEEKEAAKQIYFERCAGCHGVLRKGATGKNLEPHWSKTDADGKKTEGGTLNLGTKRLENIIAYGTEGG MVNYDDILTKEEINMMARYIQNTPDVPPEFSLQDMKDSWKLIVPVDQRPKKQLNNINLKNVFAITLRDAGKLALVDGDTHTIWKVLDTGYAVHISRLSAS GRYVYTVGRDGLTTIIDMWYEEPTTVATVRLGSDARSVDTSKFKGYEDKYLIGGTYWPPQYSIMDGETLEPIKVVSTRGQTVDGEYHPEPRVASIVASHI KPEWVVNVKETGQIILVDYTDLKNLKTTTIESAKFLHDGGWDYSKRYFMVAANASNKVAAVDTKTGKLAALVDTAKIPHPGRGANFIHPQFGPVWTTGHL GDDVVSLISTASEDPKYAKYKEHNWKVVQELKMPGAGNLFVKTHPKSKNLWADAPMNPEREVAESVYVYDLADLSKEPKRLDVAKDSGLPESKAIRRATH PEYNEAGNEVWISLWGGKTDQSAIVIYDDKTLKLKKVITDPAIVTPTGKFNVFNTMHDVY
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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