Pseudomonas syringae pv. syringae SM, PssSM_5053 (tssB-2)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTCGGGTCCATATCACTTATGACGTGGACATCGGCGATGCTCAGGAAAAGAAAGAGCTGCCATTCGTTGTAGGCGTTCTGGGCGATTTCTCCGGCAACC CGCTGGAGCCGCTGCCCAAGCTCAAGGATCGCAAGTTCATCTTCATCGACCGCGACAATTTCAATGGCGTCCTGAAAGGCATCAAGCCGCGCCTGGCGTA TCGCGTCGACAACACCCTGGCAAAAGACGGCACCCAACTCGGTGTCGAGCTGAACTTCAATGCGCTGGAAGACTTCGAGCCGCAGAACGTCGTGCGTCAG GTCGAGCCGCTGCGCAAGCTGCTGGAAGTGCGTAACAAGCTGGCTGACCTGCGTAACAAGATGGGTGGCAACGACAAGCTTGAAGAACTGCTGATGGATG TGTTGCAGAACACTGAAAAGCTGAAAACCCTGGGCAAGGAATTCGGCCGTGAAGCCGCCGCTCCTGCCACCGACAGCAAAGAGTAAGGAGGAGCCTGACG
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| DNA Sequence for Gene |
>PssSM_5053
|tssB-2
ATGACCGATAAGCAACCCGTGACTCAGCAGGACAGCGCTCTGGTTGAAGTTGAAAACTTCGCCCCGCAATCTTCCTTGCTCGACAGCATCATTTCCGAAA GCCGCGTTGCACGCTCCGAAACCGAGCGCACCCGTACCCGCGATCTGATCGGCGAACTGGTGGCCCAGGTACTTGAAGGCGAGATGACGCCGAGCAAGGA CCTGATTGCCGTGCTCGACGCGCGCATCGCCGAGATCGATTCGATGCTCTCCGAGCAAATGAACGAAATCATGCACGCTCGTGAATTCCAGCAACTGGAA GCCTCCTGGCGCGGCTTGAAATATCAGGTTGACCAGACCGAGACCAGCACCACGCTGAAGATTCACCTGCTCAACGCGTCGAAAAAAGACCTCGTGCGTG ACCTCAAGGCCTCGTCCGAATTCGACCAGAGCGCACTGTTCAAGAAGATCTACGAAGAAGAGTACGGCACCTTCGGTGGCGCGCCGTTCGGCATGCTGCT GGGTGACTACGAGTTCAACCGCAGCCCGGAAGACATGTACCTGCTGGAAGAGATCTCCCACGTGGCAGCCGCCGCCCACGCGCCGTTCATTTCGGCTGCA TCGGCCGAGCTGTTCGGCTGGGACTCGTTCACCGACATGGCCGGCCCTCGCGACCTGGCGAAGATCTTCGACACCGTCGAATACGCCAAGTGGAAGTCGT TCCGCGCCTCTGAAGACTCCCGCTACGTCGGCCTGACCCTGCCGCACGTGCTGGGTCGTCTGCCGTATGGCCCGGATACCACGCCCGTCGAAGAATTCAA CTTCGTCGAAAGCGTCGATGGCCGTGACCACAACAAATACCTGTGGATGAACGCTGCCTACGCGCTGGGCACCCGCGTGACCGATGCATTCTCGCGCTAC GGCTGGTGCGTGGCGATCCGTGGTGTGGAAGGCGGTGGTCTGGTCGAAGGCCTGCCGACGCACACCTTCAAGACCGATGACGGTGAAATCGCGCTCAAAT GCCCGACTGAAATCGCCATCACCGACCGTCGCGAAAAAGAGCTCTCGGACCTCGGCTTCATTCCGCTGGTGCACTGCAAAGGCACCGACTACGCCGCGTT CTTCGGCACCCAGTCGACCCAGAAGCAGAAGCAGTACAACACCGACATTGCCAACGCCAACGCGCGTCTGTCGGCGCAACTGCAATACATCTTCGCGACC TCGCGTATCGCTCACTACATGAAAGCGATCATGCGCGACAAGATCGGCAGTTTTGCATCGCGTAAGGATGTCGAGCTGTTCCTCAACAAGTGGCTGTCCA GCTACGTGTTGCTGGATGATACCGCCAGCCAGGAAGCCAAGGCCAAGTTCCCGCTGCGCGAAGCGCGTGCCGAAGTGTTCGAAGTCCCTGGCAAGCCTGG CGTCTACAAGGCCGTGACTTACCTGCGTCCGCATTACCAACTGGATGAACTGACGGCATCGCTGCGTCTGGTCGCCGAATTGCCGCAATCGACTCGCGGC TGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCAACAGTTAGCCAGGGAGGCAACATGAGTAGTCAACACAAGCTGTTGCCTTCATTGCTGGATCGATTGCTCGACGATCGTCCACATCAATCCGTGGAA TCGTCATCGCAACGGTTGAGCTCGCTGGCCGATTACAAGGCCAGCATCGTTCGTGACCTGGAGATTCTGGTAAACACTCGCCAGTCTCTGGTCGCTGGCG AGCTGGAAGGTTTCGCTAATCTGAGCGGCACCATCCTCGACTACGGTATGCCCGACTTCACCAGTAGAAGCGTGCTCGACCCTCAGGATCGTCTTTTGAT CCAGCGCCAGCTGGAAAAGGCCATCTCGGTGGGCGACCGACGCTTTCGCAGCGTGAAAGTCCAGTTGCTTGCACAACAGACCGGCCAACGCATGCTGACT TTTCGTGTGGACGCAGTACTGCGTCTGCAGGACATTTCGCGTCAGGTTTCTTTTGACGCCGTGCTGCAGGTCAACACTCAGGAATACAAAGTGCAGAACC
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| Amino Acid Sequence |
>EvpB family type VI secretion protein
MTDKQPVTQQDSALVEVENFAPQSSLLDSIISESRVARSETERTRTRDLIGELVAQVLEGEMTPSKDLIAVLDARIAEIDSMLSEQMNEIMHAREFQQLE ASWRGLKYQVDQTETSTTLKIHLLNASKKDLVRDLKASSEFDQSALFKKIYEEEYGTFGGAPFGMLLGDYEFNRSPEDMYLLEEISHVAAAAHAPFISAA SAELFGWDSFTDMAGPRDLAKIFDTVEYAKWKSFRASEDSRYVGLTLPHVLGRLPYGPDTTPVEEFNFVESVDGRDHNKYLWMNAAYALGTRVTDAFSRY GWCVAIRGVEGGGLVEGLPTHTFKTDDGEIALKCPTEIAITDRREKELSDLGFIPLVHCKGTDYAAFFGTQSTQKQKQYNTDIANANARLSAQLQYIFAT SRIAHYMKAIMRDKIGSFASRKDVELFLNKWLSSYVLLDDTASQEAKAKFPLREARAEVFEVPGKPGVYKAVTYLRPHYQLDELTASLRLVAELPQSTRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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