Pseudomonas otitidis LNU-E-001, CR65_RS0122485
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas otitidis strain LNU-E-001 contig_79, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCTGGGGCTGACCCTGCTGATGCTGGCCGGTGCCTGGCAGGGGCTGCGCAGAGGACGGCGCTGGGCCTACCTGCCGGGCCTGCTCGGCCTGCTGCTGAC CCTGGCCCTGGAGTGCCTGCTGTTGCTGGTGGACGACCCGCTGAACAGCATCGAGGCGCTGATCATCCTGCCCGCCGCTTGCCTGCCGCTGCTCATCGGT TGCAATTTCAGCGCCGGCGGCTCGGGGGGAGGGCGTCGACGCGGCGGCGATTACGCTAGCTCATCGGGTTCCTCGTCGTCCAGTTCGTCCAGTTCGTCTT CGGACTCGTTCTCCGGCGGCGGAGGCTCGAGTGGCGGCGGTGGCGCCTCCGGTAGTTGGTGATTGGCGAAAACCCTTTTCAATCAATGAATTGAAAAGTT GGAACGGTTCCTGCAGTGACCCGCCCGACGCGCATTCCGGCGTCAAAAGTTTGTTCGGCGCCCACCTACGGGCGCCATACGCAGGGCAGGGGAGTCGAGA
|
|
| DNA Sequence for Gene |
>CR65_RS0122485
GTGGATCGCACGCAACTGATCAGCAATGTGCGCAGCAACCTGGCGGGACTGGGGCGCGGCAGCCTCGGCGTGCCGGTCCTGCTGCTGGCCATGCTGGCGA TGATGACCCTGCCGATCCCGCCATTCCTGCTGGACGTGCTGTTCACCTTCAACATCGCCCTGTCCATCGTCGTCCTGCTGGTCTGCGTGTACGCCCTGCG GCCGCTGGACTTCGCCGTGTTCCCGACCATCCTGCTGGTGGCGACCCTGTTGCGCCTGGCGCTGAACGTTGCCTCGACCCGCGTGGTGCTGCTCCACGGC CACGACGGCCATGGCGCCGCAGGCAAGGTGATCCAGGCCTTCGGCGAAGTGGTGATCGGCGGCAACTACGTGGTCGGGGTGGTGGTGTTCGCGATCCTCA TGATCATCAACTTCGTGGTGGTGACCAAGGGCGCCGGGCGGATTTCCGAAGTCAGCGCGCGCTTCACCCTGGATGCCATGCCCGGCAAGCAGATGGCCAT CGACGCCGACCTCAACGCCGGCCTGATCGAGCAGGAGGAAGCCAAGAAGCGCCGCAGCGAGGTGGCCCAGGAGGCCGACTTCTACGGTTCGATGGACGGT GCCAGCAAGTTCGTCCGCGGCGACGCCATCGCCGGCCTGCTGATTCTCTTCATCAACCTGATCGGCGGCGTCGCCATCGGCATGATCCAGCATTCGATGT CCTTTGGCGACGCCGGCAAGGTCTACGCCCTGCTGACCATCGGTGACGGCCTGGTGGCACAACTGCCGTCGCTGCTGCTGTCGACCGCGGCGGCGATCAT GGTGACGCGGGTCTCCAGTTCCGAGGACATGGGCCAGCAGGTCAACCGGCAGATGTTCGCCTCGCCCAAGGCGCTGGCGATTTCCGCGGCGATCCTGATC GCCATGGGCGCCGTGCCGGGCATGCCGCACGTTTCCTTCATCGGCCTCGGCGCCCTGGCCGGTGCTGCCGCCTACTGGATCTGGCACCGGCAGAACAAGG CCAAGCAGGTCGCCGAGCAGGAGGTGCAGCGCCAGCAGGAGCTGCTGCCGGCGCAGCGCGCCCAGGAGGTCAAGGAACTGGGTTGGGACGACGTCACCCC GGTGGACATGGTCGGCCTGGAAGTCGGCTACCGGCTGATCCCGCTGGTCGACCGCAACCAGGGCGGGCAACTGCTGGCGCGGATCAAGGGCGTACGCAAG AAGCTGTCCCAGGAGCTGGGCTTCCTGATGCCCTCGGTGCACATCCGCGACAACCTCGACCTGCTGCCCAACGCCTACCGTCTGACCCTGATGGGGGTCA GCGTGGCCGAAGCGGAGATCTATCCCGATCGCGAGCTGGCGATCAACCCCGGCCAGGTATTCGGCAGCCTCAACGGCATCGCCGGCAAGGACCCGGCCTT CGGCCTGGAGGCGGTATGGATCGAGCCCGGCCAGCGCGACCAGGCGCAGTCGCTGGGCTACACCGTGGTGGATGCGAGCACCGTGGTCGCCACTCACCTG AACCAGGTGCTGCACAAGCACGCCCACGAGCTGCTGGGCCATGAAGAAGTGCAACAGCTCCTGCAATTGCTCGCGCGCAGCTCGCCGAAGCTGGCGGAAG AGCTGGTGCCGGGGCTGATTTCCCTGTCCACCCTGCTCAAGGTCCTGCAGGCGCTGCTCCAGGAGCAGGTGCCGGTGCGCGACATCCGTACCATCGCCGA GGCCATCGCCAACGTCGCTCCACGGAGTCAAGATCCCGGCGCGATGGTCGCCGCGGTTCGCGTCGCGTTGTCCCGCGCAATCGTGCAAAGCATTGTCGGG CTTGAGCCGGAGCTGCCTGTGATCACGCTCGAGCCGAGGTTGGAACAGATTTTGCTGAACAGCATGCAGAAGGCCGGACAAGGCTCCGAGGACGGCATGT TGCTGGAGCCGGGGATGGCCGAGAAGCTGCAACGCTCGCTGATCGAGAGCGCGCAACGCCAGGAGATGCTCGGTAAGCCGGCGATCCTGCTGGTTGCCGG ACCGATCCGCTCGATGATGTCGCGCTTCGCGCGGATGGCGGTGCCCAGCATGCATGTGCTGGCCTACCAGGAAATCCCGGACAACAAGCAAGTCACCATC GTCGCGACGGTGGGACAGAACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACGAGGGCTGCGCCGGCTCCAGGGCCGGCACACCGGGCAACCTGAGGTTGCCGGCAAGACTACTGAACTGAGGGGTTCGGGCAATGCAAGTCAAACGCTT CTTCGCCGCCGATATGCGCCAGGCCATGAAACTGGTCCGCGACGAACTGGGTCCGGACGCCGCGATTCTCGGCAACCGCCGGGTCGCCGGCGGCATCGAG CTGACCGCGGCGTTGGATTACCAGGCCCCGCCGGCGCCGAGCAAGCCCAACCCGGCGCTGGAAGTGGAGCTGCGCAAGACCCAGGCGCGGATCGCCGAGG CGCGCGCCGAGTTGACGGCGCGTCCGGCGGAAAACCAGCGCAAGGACCGTCAATTGTTCGCCGAGGAGAAGCCGGCGCGTCCGTCCCTGGCCGAGTCCAT GACGGCGGCGCAGGCCAAGCCCCAGGCGGGCGGCCAGACCCTCGAGGCAATGCGTTTCGAACTGAACGGCCTGCGCGAGCTGATCGAGGTACAACTGGGT
|
|
| Amino Acid Sequence |
>flagellar biosynthesis protein FlhA
MDRTQLISNVRSNLAGLGRGSLGVPVLLLAMLAMMTLPIPPFLLDVLFTFNIALSIVVLLVCVYALRPLDFAVFPTILLVATLLRLALNVASTRVVLLHG HDGHGAAGKVIQAFGEVVIGGNYVVGVVVFAILMIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIEQEEAKKRRSEVAQEADFYGSMDG ASKFVRGDAIAGLLILFINLIGGVAIGMIQHSMSFGDAGKVYALLTIGDGLVAQLPSLLLSTAAAIMVTRVSSSEDMGQQVNRQMFASPKALAISAAILI AMGAVPGMPHVSFIGLGALAGAAAYWIWHRQNKAKQVAEQEVQRQQELLPAQRAQEVKELGWDDVTPVDMVGLEVGYRLIPLVDRNQGGQLLARIKGVRK KLSQELGFLMPSVHIRDNLDLLPNAYRLTLMGVSVAEAEIYPDRELAINPGQVFGSLNGIAGKDPAFGLEAVWIEPGQRDQAQSLGYTVVDASTVVATHL NQVLHKHAHELLGHEEVQQLLQLLARSSPKLAEELVPGLISLSTLLKVLQALLQEQVPVRDIRTIAEAIANVAPRSQDPGAMVAAVRVALSRAIVQSIVG LEPELPVITLEPRLEQILLNSMQKAGQGSEDGMLLEPGMAEKLQRSLIESAQRQEMLGKPAILLVAGPIRSMMSRFARMAVPSMHVLAYQEIPDNKQVTI VATVGQN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|