Strain | Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 Q378DRAFT_scaffold00012.12_C, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TACTTCCAGCAAGTCGGCGGCATCGAGTGCTACCCGGTCACCGGTGAGATCACCTATGGCCTGGAGCGCCTGGCCATGTACATCCAGGGCGTCGATTCGG TGTACGACCTGGTCTGGGCCGACGGCCCGTTCGGCAAGGTCACCTACGGCGACGTGTTCCACCAGAACGAGGTGGAGCAGTCGACCTACAACTTCGAGCA CGCCAACGTCGACAAGCTGTTCGAACTGTTCGACTTCTACGAAAGCGAAGCGAACCGCCTGATCAAGCTGGACCTGCCGCTGCCGACCTATGAAATGGTG TTGAAGGCTTCCCACACCTTCAACCTGCTGGACGCCCGCCGCGCCATCTCGGTGACCGAGCGCCAGCGTTACATCCTGCGCGTACGCACCCTGGCCCGGG ACGTGGCGCAAAGCTATCTGCAAGCCCGCGCACGCCTGGGCTTCCCGATGGCCACCCCTGAACTGCGTGACGAAGTGTTGGCGAAGCTGGAGGCTGCACA
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DNA Sequence for Gene |
>Q378_RS0113585
ATGAGTGCTCAAGATTTCCTGGTTGAACTGGGCACCGAAGAGCTGCCACCCAAGGCCCTTGCTACCCTCGGCGACGCCTTCCTGGCCGGTATCGAGAGGG GCCTGCAGGCCGCAGGCCTGAACTACACCGGCAAGCAGGTGTACGCCGCACCGCGTCGCCTGGCCGTGCTGATCCGCCAGCTCGACGTGCAGCAGCCGGA CCGCAGCATCAATATCGACGGCCCGCCCATGCAGGCTGCCTTCAAGGACGGCGAGCCAACCCAGGCCGCCCTGGGCTTTGCCAAGAAATGCGGCGTAGAG CTGTCGGAAATCGACCAGAGCGGCGCCAAGCTGCGCTTCTCCCAGCACATTCCGGGCAAGGCCACCGCGAGCCTGCTGCCGACCATCGTCGAAGATTCGC TCAACGACCTGCCGATCCCCAAGCGCATGCGCTGGGCGGCCAGCCGTGAAGAGTTCGTGCGCCCGACCCAGTGGCTGGTGATGCTGCTCGGCGACCAAGT GGTCGACTGCACCATCCTGTCGCAGCAGGCCGGCCGTGAATCCCGTGGCCACCGTTTCCACCACCCGGAAAACGTGGTCATCACCACCCCGGCCAACTAT GTCGAAGACCTGCGCAAAGCCTACGTGCTGGCCGACTTCGCCGAGCGCCGCGAGCTGATCAGCAAGCGTACTGCCGAACTTGCCCTACAGCAGGAAGGCA CTGCCATCGTGCCAGCGGCGCTGCTGGACGAAGTGACCGCGCTGGTCGAGTGGCCGGTGCCGCTGGTGTGCTCGTTCGAGGAGCGTTTCCTCGACGTGCC GCAGGAAGCCCTGATCACCACCATGCAGGACAACCAGAAGTACTTCTGCCTGCTGGACAGCGAAGGCAAGCTGCTGCCGCGCTTCATCACCGTGGCCAAC GTCGAGAGCCGTGACCCCAAGCAGATCGTGCAGGGTAACGAGAAGGTCGTGCGCCCACGCCTGACCGACGCCGAGTTCTTCTTCAAGCAAGACAAGAAGC AGCCGCTGGAAACCTTCAACGAGCGCCTGAAGAACGTGGTGTTCCAGGCTCAGCTGGGCACCGTCTACGACAAGGCCGAGCGCGTTTCCAGGCTGGCTGC CTTCATCGCCCCGCTGATCGGCGGCGACGCCCAGCGCGCTGGCCGTGCAGGCCTGCTGTCGAAGTGCGACCTGGCCACCGAGATGGTCGGCGAGTTCCCT GAAATGCAGGGTGTTGCCGGTTACTACTACGCGCTCAACGATGGCGAGCCGCAAGACGTCGCCCTGGCCCTGAACGAGCAGTACATGCCGCGCGGTGCTG GCGCCGAGCTGCCGCAGACCCTTACCGGTGCGGCCGTGGCCATCGCCGACAAGCTCGACACCCTGGTCGGCATCTTCGGCATCGGCATGCTGCCCACCGG CAGCAAGGACCCGTACGCCCTGCGCCGTGCCGCCCTGGGCGTGCTGCGCATCCTCATCGAGAAGCAGCTGGACCTGGACCTGACCACTGCGGTCGAGTTC GCGGTCAAGCAGTTTGGCGCCAAGGTCAAGGCCGCCGGCCTGTCCGAGCAGGTGCTGGAATTCGTCTTCGACCGCCTGCGCGCGCGCTACGAAGACGAAG GCATCGACGTCGCCACCTACCTGTCGGTACGCGCCCTGAAGCCGGGCTCGGCCCTGGACTTCGACCAGCGCGTGCAGGCCGTGCAGGCCTTCCGCAAGCT GCCGGAAGCCGAAGCCCTGGCCGCGGTGAACAAGCGCGTGTCGAACCTGCTGAGCAAGGCCGAAGGCGCCATCGCCGACCAGGTCGAGCCGAAGTACTTC GACAACGCCAACGAGTTCTCTCTGTACTCGGCCATCCAGCAGGCCGACCAGGCCGTGCAACCGATGGCTGCCGCACGCCAGTACAGCGAGTCGCTGGCGC GCCTGGCCGCCCTGCGTGACCCGGTCGATGCCTTCTTCGAGGCAGTGATGGTCAATGCCGAGGATGCCAAGGTACGTGCCAACCGTTATGCCCTGCTCAG CCGCCTGCGCGGCCTGTTCCTGGGCGTTGCCGACATTTCGCTGCTGGGGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GCCTTGAAACTGCTGATTCTCGATCGTGACGGGGTGATCAACCAGGACTCCGACGCCTATATCAAGTCGCTGGAGGAGTGGATCCCGATACCCGGCTCGG TCGAGGCCATCGCGCAGTTGAGCAAGGCGGGCTGGACGGTGGCCGTGGCCACCAACCAGTCCGGCATTGCCCGTGGCTACTACTCGCTGGCAACGCTCGA GGCCATGCATGCGCGCTTGCGTGCACTGGTGGCAGAGCAGGGCGGCGAGGTGGGCCACATCGTGTATTGCCCGCACGGGCCGGACGAAGGCTGCGCTTGC CGCAAGCCCAAGCCAGGCATGCTGCGGGCGATTGCCGAGCATTACCAGGCGGACCTTCGCGGCGTCTGGTTCATCGGCGACAGTTCAGGTGACCTGCAAG CCGCCTTGGCCGTCGATGCACAACCGGTGCTGGTGAAAACCGGCAAGGGTGAGCGGACCCTGCAAAAGGGCGTCCCTGAAACTACACTGATTTTCGACGA
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Amino Acid Sequence |
>glycyl-tRNA ligase subunit beta
MSAQDFLVELGTEELPPKALATLGDAFLAGIERGLQAAGLNYTGKQVYAAPRRLAVLIRQLDVQQPDRSINIDGPPMQAAFKDGEPTQAALGFAKKCGVE LSEIDQSGAKLRFSQHIPGKATASLLPTIVEDSLNDLPIPKRMRWAASREEFVRPTQWLVMLLGDQVVDCTILSQQAGRESRGHRFHHPENVVITTPANY VEDLRKAYVLADFAERRELISKRTAELALQQEGTAIVPAALLDEVTALVEWPVPLVCSFEERFLDVPQEALITTMQDNQKYFCLLDSEGKLLPRFITVAN VESRDPKQIVQGNEKVVRPRLTDAEFFFKQDKKQPLETFNERLKNVVFQAQLGTVYDKAERVSRLAAFIAPLIGGDAQRAGRAGLLSKCDLATEMVGEFP EMQGVAGYYYALNDGEPQDVALALNEQYMPRGAGAELPQTLTGAAVAIADKLDTLVGIFGIGMLPTGSKDPYALRRAALGVLRILIEKQLDLDLTTAVEF AVKQFGAKVKAAGLSEQVLEFVFDRLRARYEDEGIDVATYLSVRALKPGSALDFDQRVQAVQAFRKLPEAEALAAVNKRVSNLLSKAEGAIADQVEPKYF DNANEFSLYSAIQQADQAVQPMAAARQYSESLARLAALRDPVDAFFEAVMVNAEDAKVRANRYALLSRLRGLFLGVADISLLG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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