Pseudomonas sp. URMO17WK12:I8, F639_RS0107625
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I8 F639DRAFT_scaffold00012.12_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGCCGGCGACAACGCCGCTTCGGTGCAGCTGGTGCTGGAAGACGGCAGCCTGTTCAAGCAGGACGGGCGCCTGGAGTTCTCCGAAGTGTCGGTCGACGA GACCACCGGCTCCGTGACCCTGCGCGCGCTCTTCCCCAACCCCGATCACACCCTGCTGCCTGGCATGTTCGTGCATGCGCGGCTCAAGGCCGGGGTCAAC GCCAATGCCATCCTGGCGCCGCAACAAGGCGTGACCCGCGACCTCAAGGGCGCGCCCACCGCGCTGGTGGTCAACCAGGAGAACAAGGTCGAACTGCGCC AGCTCAAGGCCAGCCGTACCCTGGGCAGCGACTGGCTGATCGAGGAAGGCTTGAACCCGGGCGACCGCCTGATCACCGAAGGCCTGCAGTACGTACGCCC TGGGGTCGAGGTCAAGGTCAGCGACGCCACCAACGTCAAGAAGCCAGGCAGCCCTGATCAGGCCAACGCGGCCAAAGCAGACGCCAAAGCGGAGTAAACC
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| DNA Sequence for Gene |
>F639_RS0107625
ATGTCGAAGTTCTTTATCGATCGCCCGATCTTCGCCTGGGTGATTGCCTTGGTGATCATGCTGGTCGGCGCCTTGTCGATCCTGAAGCTGCCGATCAACC AGTACCCGAGCATCGCGCCGCCGGCCATCGCCATCGCCGTGACCTACCCGGGCGCCTCGGCGCAGACCGTGCAGGACACCGTGGTGCAGGTCATCGAGCA GCAGCTCAACGGTATCGACAACCTGCGTTATGTGTCGTCGGAAAGTAACTCCGACGGCAGCATGACCATTACCGCTACCTTCGAGCAGGGCACCAACCCT GACACCGCCCAGGTCCAGGTGCAGAACAAGCTGAACCTGGCCACCCCGCTGCTGCCGCAGGAAGTGCAGCAGCAAGGTATCCGCGTCACCAAGGCCGTGA AGAACTTCCTGCTGGTGATCGGCCTGGTGTCCGAAGACGGCAGCATGACCAAGGACGACCTGGCCAACTACATCGTCTCGAACATGCAGGACCCGATTTC GCGGACTGCCGGTGTGGGTGACTTCCAGGTGTTCGGTGCGCAGTACGCCATGCGTATCTGGCTCGATCCGGCCAAGCTGAACAAATTCCAGCTGACCCCG GTCGACGTCAAGACCGCCGTTGCCGCGCAGAACGTGCAGGTGTCCTCCGGCCAGCTCGGCGGCTTGCCCGCCATGCCTGGCACCCAGCTGAACGCCACCA TCATCGGCAAGACCCGTCTGCAGACCGCCGAGCAGTTCGAGAAGATCCTGCTCAAGGTCAACACCGACGGTTCGCAGGTGCGTCTGGGTGATGTTGCCCA GGTCGGCCTGGGCGGCGAAAACTACGCGGTGAGCGCCCAGTTCAACGGCAAGCCGGCTTCCGGCCTTGCGGTAAAACTGGCCACTGGTGCCAACGCCCTG GACACTGCCAAGGCCCTGCGCAAGACCATTTCCGACCTGGAACCGTTCTTCCCGCCCGGGGTGAAAGCGGTATTCCCGTATGACACCACCCCGGTGGTCA CCGAATCGATCAGCGGTGTGATCCACACCTTGATCGAAGCCGTGGTCCTGGTGTTCCTGGTGATGTACCTGTTCCTGCAGAACTTCCGCGCCACCATCAT CACCACCATGACCGTCCCGGTGGTGTTGCTGGGTACCTTCGGTATCCTTGCCGCTGCGGGCTTCAGCATCAACACCCTGACCATGTTCGCCATGGTCCTG GCCATCGGCTTGCTGGTGGACGACGCCATCGTCGTGGTGGAGAACGTCGAGCGGGTGATGTCCGAAGAGGGCCTGCCGCCCAAAGAGGCGACCAAGCGCT CGATGGAACAGATCCAGGGTGCCCTGGTGGGTATCGCCCTGGTGCTGTCGGCGGTACTGCTGCCCATGGCGTTCTTTGGTGGTTCCACCGGCGTGATCTA CCGGCAGTTCTCCATCACCATCGTTTCGGCCATGGGCCTTTCGGTACTGGTGGCGCTGATCTTCACCCCGGCCCTGTGTGCAACCATGCTCAAGCCGCTG AAGAAAGGCGAGCACCACACCGCCAAAGGTGGCTTCTTCGGCTGGTTCAACCGCAACTTCGACCGCAGCGTCAATGGTTACGAGCGTAGCGTTGGCGCAA TCCTGCGCAACAAGGTTCCATTCCTGTTGGCCTATGCGCTGATCGTGGTCGGCATGATCTGGCTGTTCGCCCGCATCCCTACTGCGTTCCTGCCTGAAGA AGACCAGGGTGTACTGTTCGCCCAGGTACAAACGCCGGCCGGTTCCAGTGCCGAGCGCACCCAGGTGGTGGTTGACCAGATGCGTGAGTACCTGCTCAAG GAAGAATCCGACACCGTAGCGTCGGTGTTCACCGTCAACGGTTTCAACTTCGCCGGTCGCGGGCAGAGTTCGGGCATGGCGTTCATCATGCTCAAGCCCT GGGATGAACGCGCCAAGGAAAACAGCGTGTTCGCCCTGGCCCAGCGTGCCCAGCAGCACTTCTTCACGTTCCGTGACGCGATGGTGTTCGCCTTTGCCCC GCCTGCGGTACTCGAACTGGGTAACGCCACCGGCTTCGACGTGTTCCTGCAGGACCGCGGCGGTGTCGGCCACGCCAAGCTGATGGAAGCACGCAACCAG TTCCTGGCCAAGGCCGCGCAGAGCAAGATCCTCAGCGCCGTGCGCCCGAACGGCCTGAACGATGAACCGCAATACCAGCTGACCATTGATGACGAACGTG CCAGCGCCCTGGGCGTGACCATCGCCGACATCAACAACACCCTGTCGATTGCCTTGGGTGCCAGCTACGTCAACGACTTCATCGACCGTGGCCGGGTCAA GAAGGTGTACATCCAGGGTGAACCCAACTCGCGGATGAGCCCGGAAGACCTGCAGAAGTGGTACGTGCGCAACGGCGCGGGCGAGATGGTGCCGTTCTCC TCCTTCGCCAAGGGCGAATGGACCTACGGCTCGCCGAAACTGTCGCGCTACAACGGCGTCGAGGCGATGGAAATCCTGGGTGCGCCAGCGCCGGGCTACA GTACCGGTGAGGCCATGGCCGAAGTCGAGCGTATCGCCGGCGAACTGCCAAGCGGTGTCGGCTTCTCCTGGACCGGCATGTCCTACGAGGAAAAACTCTC CGGCTCGCAAATGCCGGCGCTGTTCGCCCTCTCGGTACTGTTCGTGTTCCTCTGCCTGGCAGCCTTGTACGAGAGCTGGTCGATCCCGATCGCCGTCGTA CTGGTAGTCCCACTGGGTATCATCGGTGCGCTGATCGCCACCAGCCTGCGCGGGTTGTCCAACGACGTGTACTTCCTGGTCGGCCTGTTGACCACCATCG GCCTGGCGGCGAAGAACGCGATCCTGATCGTCGAATTCGCCAAGGAACTGCACGAGCAGGGCCGCAGCCTTTATGACTCGGCCATCGAAGCGTGCCGCAT GCGTCTGCGCCCGATCATCATGACCTCGCTGGCGTTCATCCTCGGCGTGGTACCGTTGACCATCGCCAGCGGCGCCGGCGCGGGCAGCCAGCACGCCATC GGCACCGGCGTGATCGGCGGCATGATCAGTGCAACCATCCTGGCAATCTTCTGGGTACCGCTATTCTTCGTCGCAGTGTCGTCGCTGTTCGGCAGCAAAG AGCCGGAAAAACACGACTCCCCTGAAACTCCACGTTATGAGGCTGGGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCAAGTCTTTGTTGTCCCTGGCGGTAACCGCTTTCATTCTCGGCGGCTGCTCGCTGATCCCTGACTACCAGACCCCGGAATCGCCGGTGGCTGCGCAGTG GCCGCAAGGCCCTGCGTACTCGCCCACCCAGTCGGCCGACGTCGCCGCTGCCGAACAGGGCTGGCGCCAGTTCTTCCACGACCCGGCACTGCAGCAGCTG ATCCAGACCTCGCTGGTCAACAACCGCGACCTGCGTGTGGCAGCGTTGAACATCGACGCCTACCGTGCCCAGTACCGCATCCAGCGTGCCGACCTGTTCC CGGCAGTTTCGGCCACCGGCAGCGGCAGCCGCCAGCGCGTGCCAGCGAACATGTCGCAAACCGGCGAGTCAGGCATCACCAGCCAGTATTCGGCCACCCT GGGCGTCAGTGCCTATGAACTGGACCTGTTCGGCCGCGTACGCAGCCTGACCGAGCAGGCCCTGGAAACCTACCTGTCCAGCGAGCAGGCGCGCCGCTCC
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| Amino Acid Sequence |
>multidrug transporter
MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNP DTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVGDFQVFGAQYAMRIWLDPAKLNKFQLTP VDVKTAVAAQNVQVSSGQLGGLPAMPGTQLNATIIGKTRLQTAEQFEKILLKVNTDGSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANAL DTAKALRKTISDLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVL AIGLLVDDAIVVVENVERVMSEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGLSVLVALIFTPALCATMLKPL KKGEHHTAKGGFFGWFNRNFDRSVNGYERSVGAILRNKVPFLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDQMREYLLK EESDTVASVFTVNGFNFAGRGQSSGMAFIMLKPWDERAKENSVFALAQRAQQHFFTFRDAMVFAFAPPAVLELGNATGFDVFLQDRGGVGHAKLMEARNQ FLAKAAQSKILSAVRPNGLNDEPQYQLTIDDERASALGVTIADINNTLSIALGASYVNDFIDRGRVKKVYIQGEPNSRMSPEDLQKWYVRNGAGEMVPFS SFAKGEWTYGSPKLSRYNGVEAMEILGAPAPGYSTGEAMAEVERIAGELPSGVGFSWTGMSYEEKLSGSQMPALFALSVLFVFLCLAALYESWSIPIAVV LVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKELHEQGRSLYDSAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAI GTGVIGGMISATILAIFWVPLFFVAVSSLFGSKEPEKHDSPETPRYEAGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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