Pseudomonas sp. URHB0015, N526_RS0104300
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URHB0015 N526DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCAACTGCTCGATGCGATGGCGCATCTCCGCAGCGGCCTTGTTGGTGAACGTCACCGACAGGATGGAGTGGGGCGAGGCGTTTTCGACCTGGATCAACC AGGCGATACGGTGCACCAGCACTCGGGTTTTACCGGAGCCAGCACCGGCCAGGACCAACTGACGCCCCACGGAGGCCGCTACAGCCTGCCGTTGGGCATC GTTGAGGGAATTCAGCAAAAGGGAGAGATCATCGCGCATCGGGGCATTCTAGGGTGCCGCGTCAAACCGGGCAAACCGAGCTTTGCATTTACCGATGAAA GAATTGCCGAGAGCGACCGCTCGGTCATTTCTCGCCAGCCCTCACAGGCCGTGCCCCCGGCAGTTTCGGGGCAACGTGCAGCCCATCGGTTGCCTGGTTT TTATCCGCCGTGGCGGTTTGGTCAGGACCATTGCTTGTGTATGCTCCGGTGATGTTTCGGCCCAGCGTGGCCACTTCTTATAAGAACAAGATCCTTGCCT
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| DNA Sequence for Gene |
>N526_RS0104300
ATGACCCCCAACTCCAGCCTGGCTGGCGCCTTTGTCGAGCCGCAGGTTATCCGCAAGCAATACGCCATGGAGCTGGCGGTTGAGCGCACACGGCTGCTTT ACCAGGGCTCGCTGCTGCCGACGTTGTTCATGTTACTCAACGGCCTGGTATGCGCCGGCCTGCTCTGGAGTCCGCCGCGCTCTTGGCTGATCAGTGTCTG GCTGGTGTGGCTGTTATTACTGGTGGCATTGCGGGTCATTCAAGTGGCGGCCTTCGATTCGGCGATGCCCAGCCGTCAAGCCCAGCCAATCTGGCGACGC ATGTTTCTCTTGGGATCCGCCGTCAGCGGCCTGACCCTGGCCGCAGCCGGCATCGCCCTTGCGCCCACCGACAATTTCCTTCAGCAAGCCTGGGTGTTCG GCCTGATCGGTGCGGCAACACTCTCGGCCAGTGTGGCGTATGCGGTCAGCGCGCCGGCTTTTCTGTCATTTACCCTGCCTTGTCTGCTGCCAGCCGTTGG TTATCTGTTTTGGGGAGCGAACGAACAACAGCAGGGATGGGGCTGGCTTGGTTTGATCCTGCTGGGCGCCCTGAGTGTGGTGGCATGGCAGGTCAATCGC TTGATCCATGGACGGTTATTGCGCCGCTTCCAGAATCAGGCGCTGATCGAGCACCTACAGCAGGCGCAAAGTGATAGTGATCAGCTTAACCAGGCCCTGG CGCGGGAAGTCGAGCAGCGCCGCGAGGCGGAAGCGCTATTGCGCGCCGCACAGGTAGAGCTGCAAGGCCGGGTGGCGCAAAGCAGTCTTGAACTGGACGA CGCCAATCAGGCTTTGAGCAAAAGCGAAGCCCGTCTGGCGTTGGCGCTGAAGGCCAGTGAATTGGGCTTGTGGGACTGGAATCTCCAAACCGATGAAGTG CACCACACCCAGCTTGAAGAGTTGCTCGGTATTGAGCCGGCTTTCGTCACCGGGATGCCCAGTCAATTGAAACCGCGCTTGCATCCTGAGGACTTACCGC CGCTGCGGCGGGCGTTGGTGGAGCATCTGAAGGGGCGCAGTGAGGACTATCAGATCGAATATCGGGTGCGCCATGGCGACGGACATTGGGTGTGGATCGA AGATCGGGGGCGCGCCGTGCAGCGCAGCCCGGCAGGGCGGGTGTTGCGCATGGTCGGGACGCGCCGCGACATCAGCGTCAGCAAAGATCTGGAGGAGCAA CGCCAGTTAGCGGCGACGGTGTTTGAAGCGGCCAGTGAAGGCATCGTGATCCTCGACCCGAACTACATGCTGATTGCCGTCAATCAGGCGTTCAGCCGGG TCAGCGGTTATCAGATGGAGGATCTGCTGGGGCGCAATGTGGTCGAGCTACCCTGCAGTCGTGATGCGCGTCGGCACTTTCCATCGATCCAGAAAGCCCT GGAGCAGTCGGGTCATTGGCAGGGAGAACTGGTCGAGGCCCGTAAAAACGGTGAGCTGTATCCGCAATGGCTGCAACTAAGCGTAGTGCGCGATCGCCGA GGAAACGTCAGTCATATTGTGGGGTTCTTCGCCGATCTTTCGGCGCGCCGCGCCGCTGAAGAACGAATGCGCTACCTGACCCACTATGACGACCTGACGG GCTTGGCGAATCGTTCGTTGTTCCGTGAGCGCCTGCATGAAGCCCATCAACGCGTGCAGCAGGGAGGTCGCAGTCTGGCGTTGCTGCATATCAACCTCGA CCGTTTCAAGTTACTCAATGACAGCCTTGGTCATGATGTGGCCGACCAACTGTTGCAGAAGATGGCTCGACGCCTGGTCAATGCGCTGCCGGAAGCGGAC ACCATCGCTCGCCTGTCCAGCGATGAGTTTGCCGTGCTTTTCGATGCCTATGGCAGTTTGTCGAGCCTGGCGCGGGTGGCGACCCGACTGGCGAATAAGC TGCGCGTGCCAATGACCATCGAAGGGCATGAGCTGGTCGTGAGTGCGTCGATGGGTATCAGCATGTTGCCGGACAATGCCCGGCAAATTTCGACGCTGGT CAGCCAATCGAATATGGCCATGCAGCATGCAAAGCATTTGGGAGGTAACAACTTCCAGTTTTATACCGACAGCCTTCAGGCCAGTACCCTTGAGCGATTG CAATTGGAAAACCAGTTGCGCAAGGCCATTGAGGAGCAGCAGCTTAAAGTCTATTACCAGCCCAAGCTGTGCCTGGCCACAGGTCGCCTGAACGCCGCTG AGGCATTGGTGCGCTGGGATCACCCAACGATGGGGCGGGTGCCGCCGGGGGACTTTATCGGCCTGGCCGAAGAGACCGGGCTGATCGGCTCGATTGGCGA GTTTGTATTGCGCCAGGCCTGTTGGCAGGCGTGTGAGTGGCAGCGTCAGGGGCTGGAGCCGATCCGGGTGTCGGTCAATCTATCGGTCCATCAATTGCGC CAGGGCAAGTTGGTCAGTCTGGTGCGCCAGGTCCTTGATGAAACCGGACTAGCGCCGCACTACCTGGAGCTGGAGCTGACCGAAAGCCAGTTACTCGACA GTGTTGAGCACATCATCGTGACCTTTCGGCAATTGCGCGATCTGGGGGTAAAGCTGGCTATCGACGATTTTGGCACTGGATATTCGTCGTTGAGCTACCT CAAACGCATTCCGGTGGATTACGTGAAAATCGATCAGGCCTTCATTCGCGGGCTTGGCGAGGGCGATGCCGACGTGGCCATTACCCGAGCAATCATCGCC ATGGCCCATGGCCTGTCGCTCAAGGTGGTGGCTGAAGGGGTCGAGCGAGTCGAGCAGCTCGAGTTCCTCAAGGCCGAACGCTGTGACGAAGTGCAGGGTT ATTTGATCAGCAGGCCGATGGAGGCCGAGGGGCTTGGGTGTCTGCTGCGTGAGCGGGATGCCGTTCAAGTCTTGAAACGTCAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCTCCCGAAAGTCATAGGTGCACTGTCGGGAGGTTAATGAGGATTTACTGGGTGACCAGCACTTCATCGATGTGCTGGATTAGTTGGCCTTTATAGTGG ATTCCAACGGCGCTTACAGGGTAGTCGCCTTCAACTTTGTATTCGACAAACTTGTCTGTCTCGACCTGAATGTTGATTCCATCGTTGCTTTCCAGAATCA GCTCCAGTGGTAGATATGGCGTGTCCTGTACCGGGCTCTTGACCAGCTTCGGCGTGATGCCCGGGTGGGCAACGGTGACGGTTCCGTAGACACGGAAATT AGGCTTTGTGCCGGGCATGCGATCGATTTGTGCAGTCCAGTTTTTGCTTTTAACATTCATTGGTTAATGCTCCATGATTAAAGATTAATTGCTTCCTGCG CATGGGATTTAACCAAGGCACTTCTGATTTTCGCGGTATTTAATTAGTGTGTTTGTAAGGTTACATATTTGGCTTGCGCAACTGGGTTGAGTGCCTGAAT
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| Amino Acid Sequence |
>diguanylate cyclase
MTPNSSLAGAFVEPQVIRKQYAMELAVERTRLLYQGSLLPTLFMLLNGLVCAGLLWSPPRSWLISVWLVWLLLLVALRVIQVAAFDSAMPSRQAQPIWRR MFLLGSAVSGLTLAAAGIALAPTDNFLQQAWVFGLIGAATLSASVAYAVSAPAFLSFTLPCLLPAVGYLFWGANEQQQGWGWLGLILLGALSVVAWQVNR LIHGRLLRRFQNQALIEHLQQAQSDSDQLNQALAREVEQRREAEALLRAAQVELQGRVAQSSLELDDANQALSKSEARLALALKASELGLWDWNLQTDEV HHTQLEELLGIEPAFVTGMPSQLKPRLHPEDLPPLRRALVEHLKGRSEDYQIEYRVRHGDGHWVWIEDRGRAVQRSPAGRVLRMVGTRRDISVSKDLEEQ RQLAATVFEAASEGIVILDPNYMLIAVNQAFSRVSGYQMEDLLGRNVVELPCSRDARRHFPSIQKALEQSGHWQGELVEARKNGELYPQWLQLSVVRDRR GNVSHIVGFFADLSARRAAEERMRYLTHYDDLTGLANRSLFRERLHEAHQRVQQGGRSLALLHINLDRFKLLNDSLGHDVADQLLQKMARRLVNALPEAD TIARLSSDEFAVLFDAYGSLSSLARVATRLANKLRVPMTIEGHELVVSASMGISMLPDNARQISTLVSQSNMAMQHAKHLGGNNFQFYTDSLQASTLERL QLENQLRKAIEEQQLKVYYQPKLCLATGRLNAAEALVRWDHPTMGRVPPGDFIGLAEETGLIGSIGEFVLRQACWQACEWQRQGLEPIRVSVNLSVHQLR QGKLVSLVRQVLDETGLAPHYLELELTESQLLDSVEHIIVTFRQLRDLGVKLAIDDFGTGYSSLSYLKRIPVDYVKIDQAFIRGLGEGDADVAITRAIIA MAHGLSLKVVAEGVERVEQLEFLKAERCDEVQGYLISRPMEAEGLGCLLRERDAVQVLKRQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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