Pseudomonas umsongensis UNC430CL58Col, N519_RS0129365
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis UNC430CL58Col N519DRAFT_scaffold00002.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AACGGTGGCGCTGGAACTGGGCTACGAAAACGCCAGCGGCTTCGTCACGATGTTTCGCAAGGCGGTGGGCAAGCCGCCGGCTCGCTACCTTTCGGATCGC ACCGGCAGCGCGGTGACGGCAGCTGCGCCCGGAATCATGCTCCCCGATCCGATCGCCCTCTGATCCAATCCGCCTGTCCTGACGCAAGCCTGCGCTGCTT TATCAAAAAGCCGCGGACTTCAGCGAAGCCCCCACGCACCCGGCAACGCCGCTCGCCCATGAAGACGACCGCGCACAACGGCGACATCGCCGCATGTCAC GCCGGCCGTTTCCCCCTCGTCAGTCCGCCTGGCAAGCCGACCATATTACGTAATTAACCATAACTATTACTCAAAACGGCCAACGGGAGGGCGCGATCAT TATTGGCCGAATCGAATAACAATCTGGCCTGATTTCACCATCATGGCGCATTGCCTTTGTTGTTAAATGCGCCATCTAAATGCAAATGAGTATTGCTTAA
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| DNA Sequence for Gene |
>N519_RS0129365
ATGAACGCTTCATCCATTACAGGGAAGTCTCGCTCGTCTCTTGCTCTGTGCGCCGATTCAGTCGCCTGTCCGCCGCTCGCCGGGCACCTCAAAAACGCGC CCTGCAGCGCGCTGGGCTCGGCGATTGCGGCAGCGCTTATGCTCAGTGCGCCGGGCGCATTTGCCGCCGAGACGGCGCAGCCGCAGAACAAGGCAGCAGA CTCCTCCCAGAAGGAAGTGGCCCTGCCGGCAATCAGCGTGACAGGCCAAATGAACAACGCGACCACCGAGGGAACCGGCTCCTACACCACCGGCGAGACG ACAGCGGCGACGCGCCTGCCGATGACGCTGAAGGAAACGCCCCAGGCGGTGACCGTGATCACGCGCCAGCGCATGGACGACCAGCAACTCAACACGGTGC AGAGCGTGTTGGAGAACACCAACGGTGTCACCGCGCGCCAGGCCGACAGCGAGCGCACCAGCTTCTATTCGCGGGGGTTCCTGATTAACAACGTGCAGTA CGACGGCATCCCCACCGTGATCGGCAACACCGTCAACGGCAGCGGCATCAGCGCCCTGGACACCGCGTTCTATGACCGTGTCGAGGTGGTGCGTGGCGGC TCGGCCCTGCTGACCGGCACCGGAAACCCTTCGGCCGCCATCAACCTGGTGCGCAAACGGCCAACACCTGAATTCGCCGCATCCGCCTCCCTCGGCGCCG GGAGCTGGGATACCCACCGCGGCATGGGCGACGTATCCACACCGCTGACCGAGGACGGCCGCATCCGCGCGCGCCTGGTAGGCACCTATCAGGACGGCAA CTCCTACCTGGACGGCTACAAGCCCGAACGCAAGGCGTTCTACGGCATCGTCGAGGCCGACCTGACCGCCGATACCACGGTGAGCCTGGGCTATGACTAC CAGGACATTACGCCGAAGGGCGCCACCTGGGGCGGCTTGCCGCTGTGGTACAGCGACGGTTCGCAGATCGATTATTCCCGCTCCAAGAGCTATGGGCAGG ACTGGAGCCATTTCGACAACACCCTGAAGACGGCCTTTGCCGAAGTCGAGCACCGCTTCGACAATGGCTGGACGCTCAAGGGCGTGTTCAACCAGTACCG CACCGAAACCGAAGCCGAACTGGTCTCCCTGGGTGGCCGGCCTGACCCCGCCACGGGGCTGGGCGCCTTCCCGTTTGCACTGGCGTCCGAGGGGCGTAGC CGCCAGAACACCTTTGACGTGATGGCCAGGGGCCCCTTCGAAATGCTCGGCCGCCAGCACGACCTGGTGGTCGGCGCGACAAGTTCACGCCGCAAGGCCA GTCAGGACGATGTAGCGCCGTTCTTCGCAGGCTTTACGCCGATCAACATCCATACCCTGAGCCCAGGCACGCCACGGCCCAACTTTGATGCCATACCGCA TATCCCGACCCGCACCGAGGTCAAGCAGAGCGGCATCTATAGCGCGGCCCGCTTCTCCCTGGCCGATCCGCTGAAGCTCATCATCGGCGGGCGCCTGAAC TATTACGAGGTCGACGACGACGCCAACGGCAGCACGCTGCACTACAAGAAGAACAACGAATTCACCCCGTACGCCGGACTGGTCTACGACATCGACAGTA CCTACTCGGCTTACGTCAGCTACACGGGAATCTTCAACCCGCAAACCGACTTCCGCGACACGACCGGCAACGTGCTCACGCCGTCCAAGGGCAAGACCAA GGAAGTCGGCCTCAAGGCCGCCTACCTGGACGGGCGCCTGAATGCCGCCGTGGCGGTGTTCGAAACTGAGATGGACGACGCCGCGCAGCTGGTCCCCGGC GCGTTCACCCCAGGCGGAGCCAACGCCTATACCGGCGCCGACGGCACCAAGTCTCGCGGCATCGAGTTCGACCTGCAGGGCGAGCTGGCCAATGGCTGGA ACATCTACGCCGGTATCGCCCACTTCACCGCCGAGGATGGTGACGGCGAGCGCCTGAACTCCCAGCTACCGCGCACCACGGCCCAGTTCTTCACCACCTA CCGGCTGCCCGGCGCGTGGAACAAGCTGACCCTGGGCACAGGCGTGAAGTGGCAGAGCCGCTTTTACCAGGCGCCGGGCGTTGGCACCAGCACGCTGGGC GGCGAACAGAGCGCCTATGCCCTGACCTCGGTGATGGGGCGTTACGCCCTGAGCGAGAACATCGACCTGGGCCTCAACGTCAACAACCTATTCGACAAGA AGTACGCCTTGCAGAAGGGTGACTTCGACACCGTGACCTATGGTGCCCCGCGCAACCTGATGGCCACACTGGACTACCGCTACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGCCCGCAGTACGCGGATCGCTGCCGGCGACTCGCGCCCCTACCGCCTTGAACATCGAGAACGTGCTCATGCCTACCCAAAACCCGGTTCACGTATTGG CGATACACAATGCGAACAAGGTCACCTTGTTCTGGTTGACGACTACTGTTGGCGCAGTGCTCTTCGTGACCTTCCAGTTGTTCTTCTACGTAAACGACTT TGTGAGGGCACAGGGCACCGCCCCGGCGATTACCTTCGAGCCCGGCATGCTTTGGGTGTTTCCTACCTTCTATGGCTCCTGGATCGTCACGGTGCTCCTC GCCCTGATCAAAACCCGCAAGGCCCAGTGGGCTGTCCTGATCCTCGGCAGCCTGCTTGTCGTGCTCAATACCCTGGGCGGAGTCACCGACGGGCTGCGCG ACGGCTGGTACGTCGCCTTCTCGGCGGTATTCTTCATCACCCTGCCCGGCGTGTTCGCCATCGCCGCCAGCTGGCGTCACCTCAACCGCAAAGGAACCCG
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| Amino Acid Sequence |
>TonB-dependent receptor
MNASSITGKSRSSLALCADSVACPPLAGHLKNAPCSALGSAIAAALMLSAPGAFAAETAQPQNKAADSSQKEVALPAISVTGQMNNATTEGTGSYTTGET TAATRLPMTLKETPQAVTVITRQRMDDQQLNTVQSVLENTNGVTARQADSERTSFYSRGFLINNVQYDGIPTVIGNTVNGSGISALDTAFYDRVEVVRGG SALLTGTGNPSAAINLVRKRPTPEFAASASLGAGSWDTHRGMGDVSTPLTEDGRIRARLVGTYQDGNSYLDGYKPERKAFYGIVEADLTADTTVSLGYDY QDITPKGATWGGLPLWYSDGSQIDYSRSKSYGQDWSHFDNTLKTAFAEVEHRFDNGWTLKGVFNQYRTETEAELVSLGGRPDPATGLGAFPFALASEGRS RQNTFDVMARGPFEMLGRQHDLVVGATSSRRKASQDDVAPFFAGFTPINIHTLSPGTPRPNFDAIPHIPTRTEVKQSGIYSAARFSLADPLKLIIGGRLN YYEVDDDANGSTLHYKKNNEFTPYAGLVYDIDSTYSAYVSYTGIFNPQTDFRDTTGNVLTPSKGKTKEVGLKAAYLDGRLNAAVAVFETEMDDAAQLVPG AFTPGGANAYTGADGTKSRGIEFDLQGELANGWNIYAGIAHFTAEDGDGERLNSQLPRTTAQFFTTYRLPGAWNKLTLGTGVKWQSRFYQAPGVGTSTLG GEQSAYALTSVMGRYALSENIDLGLNVNNLFDKKYALQKGDFDTVTYGAPRNLMATLDYRY
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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