Pseudomonas umsongensis UNC430CL58Col, N519_RS0109930
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis UNC430CL58Col N519DRAFT_scaffold00007.7_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGTCGAATCCAGCCCACCCTCGCGTGCCAAGCCATTGACCACTCCACCCTGAGCAGTTTCCGCCAGCAGACGCAAGGCGCGGTAGAGATTGGATTTACC GCTGCCGTTGGGGCCGGTGATCAGGTTCAGCCGTTCGAGCGGAATCACCAATTTATTGATCGAGCGGTAGTTGGCCACCGCGAGGGTTTTGAGCATGGGG AGCTTCCTGCTGCAGGGTCAGCCATTCTGCCTTATTGTCAGCAACACGGTGATCCCTGTGGCGAGGGGGCTTGCCCCCGTTGGGTTGCGAAGCAGCCCTT AAACCAGTCACCGCGTTTCTTTCAGGATCACTGTGTTAGCCGGCTTACGACTGCTGCGCAGTCGAACGGGGGCAAGCCCCCTCGCCACAGTCAAGCCCCT CGCCACAGGGAATGCAGCAAACCCGTGCACCTGTTGAACCCTGTTCTAAGCTCACAGTCGTATCGTCACTGGCACGTACGTACAACGCAAAGGAGTCTGC
|
|
| DNA Sequence for Gene |
>N519_RS0109930
ATGGCGGGTCCCGGATTGAAATTAATGGTTGGCCTGAGCCTCTTCGCCCTGCTGACCGCTTGTGGCGAGAAAAAGCCCGTCGAGAAGGACCGTCCGCGAG TCTTCGTGCAAGAGGTCAAGCCAACCGATTACGCCGCCGCGGTGACACTCACCGGCGATGTCCAGGCCCGAGTCCAGACCGAGTTGTCGTTCCGCGTGGG CGGCAAGATCATCCAGCGCATGGTCGATGTCGGTGACCGAGTGTCGGCCAAACAAGTGCTGGCCAGGCTTGACCCCAAAGACCTGCAAACCAATGTCGAT TCGGCCCAGGCCCAGGTCGTTGCCGAACAGGCGCGGGTCAAACAGACTGCCGCCGCCTTCGTTCGCCAGCAAAAACTCCTGCCCAAGGACTACACCAGCC AGAGCGAATACGACTCCGCCCAAGCGGCCTTGCGCAGCAGCCAGAGCGCATTGAGCGCGGCTCAAGCGCAATTGGCCAACGCCCGTGATCAATTGAGCTA CACCGCGTTGATTGCCGATGCGCCAGGCGTGATTACCGCGCGCCAGGCCGAAGTCGGTCAGGTGGTGCAGGCCACGGTGCCGATTTTCAGTCTGGCCCGG GATGGCGAGCGTGACGCGGTGTTCAACGTTTACGAATCGCTGCTGGCCGAGCCGCCATCGGACAGATCAATTGTGGTCAGCCTGCTCGACAATCCGAAAA TCAAGACCACGGGCACCGTTCGCGAAGTCACGCCAGCGGTGTCCGCGCAGACCGGCACGGTGCAAGTCAAAGTCAGCCTCGACGGTCTCCCTGAAGGCAT GCAGCTCGGCTCGGTGGTGAGCGCCACCGCCAAGCCTGTGGGCAAAACCGCGGTGGAGCTGCCTTGGGCTGCCCTGACCAAAAACCTCAGCGACCCTGCC GTGTGGTTAGTGGACGCCGAGGGCAAGGCGCAGTTGCACACGGTCACCGTTGGCCGTTACCTGACCGGCAAAGTCATTGTCAGCGCCGGCCTCACCGGTG GCGAAAAAGTCGTCACCGCGGGCGGCCAGTTGCTGCACCCGGGCGTACGGGTGGAGGTCGTCGAAAATACCGATCAGACCCCAACGACAGGAGCCCAACC ATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGCGCCTGTTGCTGTTGTCCGCCGCTGTGCTGCTGGGTGCCTGTTCCAAGGAAGAAGCGCCGCCAGAACCGGTGCGGCCGGTGTTGTCTGTGGAAGTGAA AGCGCTCAATCAAGAAAACCTCGGCCGGTTCGCCGGCAGCATTCAGGCCCGTTACGAAAGCAACGTTGGGTTCCGGGTGCCGGGGCGTATCGCCAGCCGT AACGTCGATGTCGGTGCCGAAGTCCAGAAAGGCGCCTTGCTCGCCACCCTCGACCCCACCGATCAGCAGAACCAGTTGCGCTCGGCCCAGGGTGACCTGG CGCGTGTTCAGGCGCAGCTCATCAACGCCCAGGCCAACGCCCGGCGTCAGCAGGAACTGTTCAATCGCGGGGTCGGCGCTCAGGCGCAACTGGACATCGC CCAGACCGATTTGAAAACCACCCAGGCGTCCCTCGATCAAGCCAGGGCCGCGGTCAATCAGGCGCAGGACCAACTCAACTACGTTGAACTGCGCACCGAT
|
|
| Amino Acid Sequence |
>RND transporter
MAGPGLKLMVGLSLFALLTACGEKKPVEKDRPRVFVQEVKPTDYAAAVTLTGDVQARVQTELSFRVGGKIIQRMVDVGDRVSAKQVLARLDPKDLQTNVD SAQAQVVAEQARVKQTAAAFVRQQKLLPKDYTSQSEYDSAQAALRSSQSALSAAQAQLANARDQLSYTALIADAPGVITARQAEVGQVVQATVPIFSLAR DGERDAVFNVYESLLAEPPSDRSIVVSLLDNPKIKTTGTVREVTPAVSAQTGTVQVKVSLDGLPEGMQLGSVVSATAKPVGKTAVELPWAALTKNLSDPA VWLVDAEGKAQLHTVTVGRYLTGKVIVSAGLTGGEKVVTAGGQLLHPGVRVEVVENTDQTPTTGAQP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|