Pseudomonas umsongensis UNC430CL58Col, N519_RS0102455
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis UNC430CL58Col N519DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCAGAGAAACAGGTGATGCCACCTTTGATCTGCTCGGCGATGGCCAGGTCCGTGCCGTCGCGTACGAAAGCCTCGTCGACCCATTTGGCTTCGGCCGGCC AGATGTGGTTTTCCAGCCAGGTCATCAGCGGCAGATCGTCGGCCAGGCCGCGGAACAGCGTCATGGCTGCATGCCCGTGGGCATTGATCAGGCCCGGGCT GAGCAGCATGCCCGGCAATTCGCGCACGTCGGTTGCGTTAAGCTTCAAGGCTGCTGCGCGAGGGCCGATAAACACAATACGACCATCGCGGATACCCAAG GCATGCTCTTTAAGGACCACGCCAGCCGGTTCGACGGGTACCAGCCAGGTCGGCAGCAATAATAGGTCGAGCGCAGCGGTGGGGGTCGGCATCGAGAGTC GGTTCCAGTGCTTTTGTAAAGGATGGCGAAGTATACCCGAGCGTCTTCGCGGGGGGATCGCTATAATCGGCGGCTTTTGTTCATGAGTGCGGGGTGTGGG
|
|
| DNA Sequence for Gene |
>N519_RS0102455
ATGCGCGATCGACTGTTGGCTGCGGAGAAGGTGAAGGCCATCGATTGGCGTGATGGCGCACTGTACCTGCTGGATCAGCGTATTTTGCCGTTCGAGGAAA CCTGGATTGCCTACACCAGCGCCGCCGGTGTGGCCGAAGCCATTCGCTCGATGGTGGTGCGCGGTGCGCCGGCCATTGGCATCAGCGCTGCCTATGGCGT GGTGCTGGCGGCTCGCGCCCGATTTGCCGAGGGTGGCGACTGGCAAGCGGCGCTGGAAGAGGATTTCGCGCTGCTGGCCGACTCCCGTCCGACCGCGGTC AACCTGTTCTGGGCCTTGGGTCGCATGCGTGAGCGGCTTGAGCGCCTGAGGGAGCACGCCGATCCGCTGTCGGTGCTGGAGGCCGAAGCCATCTCTATCC ATGAAAGTGATCGCGAAGCCAACCTGACCATGGCTCAGTTGGGCGTCGACCTGATCCGCAAACATCAAGGCAACGCCCAGGCGATCCTCACGCACTGCAA CACCGGCGCACTGGCCACCGGTGGTTTCGGCACGGCGCTGGGGGTGATTCGCGGGGCGTTCATCGAAGGCATGGTCGAGCGCGTCTACGCCGACGAAACC CGGCCATGGCTGCAAGGTTCGCGATTGACTGCGTGGGAATTGGCCAATGAGGGTATTCCGGTGACCCTCAATGTCGACTCCGCTGCTGCGCACATCATGA AAACCAAGGGTGTGACCTGGGTGATCGTCGGCGCCGACCGGATCACTGCCAATGGCGATGTGGCGAACAAAATCGGTACCTACCAGTTGGCGGTCAACGC CATGCACCACGGCGTGCGCTTCATGGTGGTGGCGCCGAGTTCGACCATCGACATGAACCTGGCCAGTGGCGAAGAGATTCCTATTGAAGAGCGTGATGGC CGCGAGTTGCTGGAAGTTGGCGGCAAGCGGGTGGGGGCGGATGTGGAAGCGTTCAACCCGGTGTTCGACGTGACCCCGGCCGACCTGATCGATGCGATCG TCACCGAAAAAGGCATCGTCGAGCGCCCGGACACTGCGAAAATGGCCCAATTGATGTGCCGCAAGCGTCTGCATTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGATCTGTATTGCCTGAAAGGACGCCATCGCGGGCAAGCCCGCCCCCACAGGTATAAGTGAGCACCGCTGAACCCTGTGGGAGCGTGCTTGCCCGCGAAG AGGCCCGGAAACACAATGAATCAGGCCCGAATCAGGCCTGAATTCTTCATTCGATGCTGCTCTAAGCCCCTCTCGTCTCCTTCAAGCCTGTCACCGGTCA ACTAACTATGCTCCATGCGCATCTGGGGGATAGGTGCGTGGCGGCTCTTGTGATAACATCCGACGGTTTCCAGGGTAGCCTGATGTGGCTGCCTTTACTG CGCAGATCCATGGCATAACTCGTTGATTTGTCGTAAGTCGGTGCATGGCACTCAGTCTGCATCGGCGAGCTTCGTTCGTCCCATATGGATGTGACGAAGT TTCACCAGAAAAAGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAGCTGAAGCAGTCCTACCTCGACTAC
|
|
| Amino Acid Sequence |
>methylthioribose-1-phosphate isomerase
MRDRLLAAEKVKAIDWRDGALYLLDQRILPFEETWIAYTSAAGVAEAIRSMVVRGAPAIGISAAYGVVLAARARFAEGGDWQAALEEDFALLADSRPTAV NLFWALGRMRERLERLREHADPLSVLEAEAISIHESDREANLTMAQLGVDLIRKHQGNAQAILTHCNTGALATGGFGTALGVIRGAFIEGMVERVYADET RPWLQGSRLTAWELANEGIPVTLNVDSAAAHIMKTKGVTWVIVGADRITANGDVANKIGTYQLAVNAMHHGVRFMVVAPSSTIDMNLASGEEIPIEERDG RELLEVGGKRVGADVEAFNPVFDVTPADLIDAIVTEKGIVERPDTAKMAQLMCRKRLH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|