Pseudomonas viridiflava LMCA8, RT94_RS01605

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas viridiflava strain LMCA8 contig_5, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ACAGGCCCCATGCTGCTCAAGGCCGTCACGCCGATTACGGCGCAGGACACGGGCGGCACGCTGCATGATCGTCTGGCTGAGCTTGGCCCGCCTGCGGTGC TGCAAGCCATTGCCGGTCTGGCAGACGGTTCGCTGATCGGCGAGGTTCAGGACGACAGCCTGGCCAACTACGCCCACAAACTGAACAAGGACGAAGCGCG TATCGACTGGTCGCGTCCGGCCGATGAGCTGGAGCGTCTGGTCCGTGCATTCAATCCATGGCCGATCTGTCACAGCACGTTGAACAGCGAAGCGCTGAAA GTCCTGGCCGCCGATCTGGTCGAAGGGCAGGGCGCACCGGGCACGATTCTGAGCGCCAGCAAGGACGGTCTGACCGTTGCCTGCGGCGAGAACGCTCTGC GCCTGACACGTCTGCAACTGCCGGGCGGCAAGCCGTTGAGCTTCACGGATCTGTTCAACAGTCGTCGCGAGAAATTCGCCGTTGGCACGGTGCTGGGTCA
DNA Sequence for Gene
>RT94_RS01605
ATGAACCCGCGTCTGGCCGCCGCCAAGGCTCTGGCTGCCGTGCTCAGCGGCAAGGCATCGCTCAACAGCTCGCTGCCCACGCAACTGGACAAGGTCGAGT TGCGTGATCGCGGCCTGACTCAGGATCTGGCATTCGGCACCGCACGCTGGCAGCCACGCCTGTCGGCGCTCGCAGCCAAACTGCTGCAAAAGCCGTTCAA GGCCGCCGACGCGGACGTCGAAGCCTTGCTGCTGGTCGGCCTGTATCAACTGTTCTACAGCCGCATACCTGCTCACGCCGCCATTGGCGAAACCGTGGGC TGCGCCGACAAGCTGAAAAAGCCTTGGGCGAAGGGTCTGCTCAACGCGGTATTGCGCAACGCCCAGCGCGAAGGCGAGGCGTTGTTGATCGAACTGGAAC ACGATCCCGTCGTCCGCACCGCTCACCCGCGCTGGCTGCAGAAAGCCTTGAAAGCCGCATGGCCCGAACAGTGGGAAGCGATCTGCGCCGCCAACAATGC GCATCCGCCGATGATCCTGCGCGTCAATCGTCGCCACCACAGCCGCGATCAATACCTTGAGCTGTTGAAGGCAGCAGGCCTTGAAGCCAGCGCCTGCACG TTCAGTCAGGACGGCATCGTGCTGGCCGAGCCCTGTGATGTGCGTTCACTGCCCGGTTTTGCCGAAGGCTGGATCAGCGTTCAGGACGAAGCCGCGCAAC TGGCCGCTGACTTGCTGGAACTTGCCCCCGGCCAACGTGTGCTGGACGCCTGCTGTGCACCGGGCGGCAAGACCTGTCACCTGCTGGAAGTCCAGCCGCA GTTGAGCGGCGTGGTCGCCGTGGATCTGGAAGCCAAACGTCTGGTGCGTGTTCGCGAGAATCTCGACCGCCTTGGTCTGGATGCCGAACTGATCGCCGCC GATGCGCGGGAAACCGCGCAGTGGTGGGACGGCAAGCCGTTCCAGCGCATCCTGCTCGACGCGCCCTGTTCGGCAACCGGCGTGATTCGTCGCCATCCGG ACATCAAGCTGACGCGTCAGCCAGACGACATCGTCGCCCTCGCGACACTGCAAGGTGAGCTGCTCGACGCCCTGTGGCCTACGCTTGAGGTGGGCGGCAT GCTGATCTACGCGACCTGCTCGACATTGCCGACGGAAAATACCGAGGTGGTCGAAGCCTTTCTGGCACGCACCTCAGGGGCAAGGGAGCTGGACATCGCC AGCGAGGCAGGTATCAAGCAGCCGCATGGTCGCCAACTGCTGGCCCAGCAGGGCGGGCATGATGGTTTCTACTACGCCAAACTGATCAAGATCGCCGCAA CGCGGGCTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AGATGCGACGGGCAACAGTGCCCAGGAATTTCCACGGAGTGAACGGTTGAAAATCATCATCCTGGGTGCAGGTCAGGTCGGCGGCACGCTGGCCGAGCAT TTGGCAGGCGAAGCCAACGACATTACCGTGGTCGACACGGACGGTGACCGGTTGCGCAACCTGGGCGACCGGCTGGACATTCGGACCGTGCAGGGCAAAG GCTCGTATCCGGCCGTTTTGCGTCAGGCCGGTGCCGACGATGCCGACATGCTGGTTGCCGTGACCAGCAGTGATGAAGCCAACATGATCGCCTGTCAGGT CGCGTACACGCTGTTTCACACGCCGACCAAGATCGCGCGAGTGCGTGAGGCCGCTTACCTGACGCGCTCTGAACTGTTCGACAACAGCGCCATTCCGGTG GACGTGCTGATCAGCCCGGAGCAGGTGGTCACCAATTACATCAAGCGTCTGATCGAGTACCCCGGCGCCCTGCAAGTGATCGACTTTGCCGGGGGCAAGG
Amino Acid Sequence
>16S rRNA methyltransferase B
MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVELRDRGLTQDLAFGTARWQPRLSALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVG CADKLKKPWAKGLLNAVLRNAQREGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILRVNRRHHSRDQYLELLKAAGLEASACT FSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGLDAELIAA DARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQPDDIVALATLQGELLDALWPTLEVGGMLIYATCSTLPTENTEVVEAFLARTSGARELDIA SEAGIKQPHGRQLLAQQGGHDGFYYAKLIKIAATRA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site