Strain | Pseudomonas viridiflava strain LMCA8 contig_5, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
ACAGGCCCCATGCTGCTCAAGGCCGTCACGCCGATTACGGCGCAGGACACGGGCGGCACGCTGCATGATCGTCTGGCTGAGCTTGGCCCGCCTGCGGTGC TGCAAGCCATTGCCGGTCTGGCAGACGGTTCGCTGATCGGCGAGGTTCAGGACGACAGCCTGGCCAACTACGCCCACAAACTGAACAAGGACGAAGCGCG TATCGACTGGTCGCGTCCGGCCGATGAGCTGGAGCGTCTGGTCCGTGCATTCAATCCATGGCCGATCTGTCACAGCACGTTGAACAGCGAAGCGCTGAAA GTCCTGGCCGCCGATCTGGTCGAAGGGCAGGGCGCACCGGGCACGATTCTGAGCGCCAGCAAGGACGGTCTGACCGTTGCCTGCGGCGAGAACGCTCTGC GCCTGACACGTCTGCAACTGCCGGGCGGCAAGCCGTTGAGCTTCACGGATCTGTTCAACAGTCGTCGCGAGAAATTCGCCGTTGGCACGGTGCTGGGTCA
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DNA Sequence for Gene |
>RT94_RS01605
ATGAACCCGCGTCTGGCCGCCGCCAAGGCTCTGGCTGCCGTGCTCAGCGGCAAGGCATCGCTCAACAGCTCGCTGCCCACGCAACTGGACAAGGTCGAGT TGCGTGATCGCGGCCTGACTCAGGATCTGGCATTCGGCACCGCACGCTGGCAGCCACGCCTGTCGGCGCTCGCAGCCAAACTGCTGCAAAAGCCGTTCAA GGCCGCCGACGCGGACGTCGAAGCCTTGCTGCTGGTCGGCCTGTATCAACTGTTCTACAGCCGCATACCTGCTCACGCCGCCATTGGCGAAACCGTGGGC TGCGCCGACAAGCTGAAAAAGCCTTGGGCGAAGGGTCTGCTCAACGCGGTATTGCGCAACGCCCAGCGCGAAGGCGAGGCGTTGTTGATCGAACTGGAAC ACGATCCCGTCGTCCGCACCGCTCACCCGCGCTGGCTGCAGAAAGCCTTGAAAGCCGCATGGCCCGAACAGTGGGAAGCGATCTGCGCCGCCAACAATGC GCATCCGCCGATGATCCTGCGCGTCAATCGTCGCCACCACAGCCGCGATCAATACCTTGAGCTGTTGAAGGCAGCAGGCCTTGAAGCCAGCGCCTGCACG TTCAGTCAGGACGGCATCGTGCTGGCCGAGCCCTGTGATGTGCGTTCACTGCCCGGTTTTGCCGAAGGCTGGATCAGCGTTCAGGACGAAGCCGCGCAAC TGGCCGCTGACTTGCTGGAACTTGCCCCCGGCCAACGTGTGCTGGACGCCTGCTGTGCACCGGGCGGCAAGACCTGTCACCTGCTGGAAGTCCAGCCGCA GTTGAGCGGCGTGGTCGCCGTGGATCTGGAAGCCAAACGTCTGGTGCGTGTTCGCGAGAATCTCGACCGCCTTGGTCTGGATGCCGAACTGATCGCCGCC GATGCGCGGGAAACCGCGCAGTGGTGGGACGGCAAGCCGTTCCAGCGCATCCTGCTCGACGCGCCCTGTTCGGCAACCGGCGTGATTCGTCGCCATCCGG ACATCAAGCTGACGCGTCAGCCAGACGACATCGTCGCCCTCGCGACACTGCAAGGTGAGCTGCTCGACGCCCTGTGGCCTACGCTTGAGGTGGGCGGCAT GCTGATCTACGCGACCTGCTCGACATTGCCGACGGAAAATACCGAGGTGGTCGAAGCCTTTCTGGCACGCACCTCAGGGGCAAGGGAGCTGGACATCGCC AGCGAGGCAGGTATCAAGCAGCCGCATGGTCGCCAACTGCTGGCCCAGCAGGGCGGGCATGATGGTTTCTACTACGCCAAACTGATCAAGATCGCCGCAA CGCGGGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
AGATGCGACGGGCAACAGTGCCCAGGAATTTCCACGGAGTGAACGGTTGAAAATCATCATCCTGGGTGCAGGTCAGGTCGGCGGCACGCTGGCCGAGCAT TTGGCAGGCGAAGCCAACGACATTACCGTGGTCGACACGGACGGTGACCGGTTGCGCAACCTGGGCGACCGGCTGGACATTCGGACCGTGCAGGGCAAAG GCTCGTATCCGGCCGTTTTGCGTCAGGCCGGTGCCGACGATGCCGACATGCTGGTTGCCGTGACCAGCAGTGATGAAGCCAACATGATCGCCTGTCAGGT CGCGTACACGCTGTTTCACACGCCGACCAAGATCGCGCGAGTGCGTGAGGCCGCTTACCTGACGCGCTCTGAACTGTTCGACAACAGCGCCATTCCGGTG GACGTGCTGATCAGCCCGGAGCAGGTGGTCACCAATTACATCAAGCGTCTGATCGAGTACCCCGGCGCCCTGCAAGTGATCGACTTTGCCGGGGGCAAGG
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Amino Acid Sequence |
>16S rRNA methyltransferase B
MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVELRDRGLTQDLAFGTARWQPRLSALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVG CADKLKKPWAKGLLNAVLRNAQREGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILRVNRRHHSRDQYLELLKAAGLEASACT FSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGLDAELIAA DARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQPDDIVALATLQGELLDALWPTLEVGGMLIYATCSTLPTENTEVVEAFLARTSGARELDIA SEAGIKQPHGRQLLAQQGGHDGFYYAKLIKIAATRA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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