Pseudomonas viridiflava LMCA8, RT94_RS13420
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_29, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGACGTGAAAATGAATGGTGCGCTCCTTCAGACATAGAATCAGGGCTATATCACCTGCTGTCTTGCCTTTAGCGGACCACTTGAGGACTTCTATTTCC CGTTCGGTCAGCCCCTTGGGATTCGATGGATCCGTCGAGTTGATTTCCATGTTCTTCATGATCGCCTCCATACCCTTTGATGGCGAGATATCGCTGTGCT TTTATCCAGTCTAGGAAAAATGCACCGGGAATTTTGCAGGCTGGAAGATATCCAGACGGATGGGCTGATGGCTTTTATGTATTCAAAAAGGAGTATCCCG GCTGGAACAGCCGTCGTAGTGCGTTTTGCTTCATGCTGGTTAGTCGGGGTCCGGCAACATGGCCGGGCAGGCAAGAACCAAATGCTCTAAACGTTTCAGG CGCCACCAGGTACAAGCCACTACAAACCGCCGGTGTTTATCCGACGTACTTTGCGGGACACTTAGCGCTAACGTTCACATTTGGGAGCCCGAGGCACACC
|
|
| DNA Sequence for Gene |
>RT94_RS13420
ATGACCGTCAGCGAAGACAAGTTCACCCGGCAGACGCTTCAGCGTGTCACACCGTTGACCCCCAGCCTGTTTACCCTGCGCACCACGCGCGATCCCGGTT TTCGCTTCAGGGCGGGGCAGTTCGCGCGTCTGGGCCTGACCAAGGCAGACGGCACCACCGTGTGGCGAGCCTATTCGATGGTGTCTTCGCCCCATGACGA GTTTCTGGAGTTCTTTTCCATCGTCGTGCCTGAAGGCGAGTTCACCAGCGAACTGAGCCGCCTGCGCGAAGGTGACAGCCTGATGGTCGAGAAGCAGGCC TTCGGTTACCTGACCCTGGACCGTTTCGTCGATGGTCGCGATCTGTGGCTGTTATCCACAGGCACCGGTGTTGCGCCGTTTCTGTCGATCCTGCAGGACT TCGAGGTATGGGAGAAATTCGAGCGTGTGATTCTGGTGTACAGCGTTCGCGAGTCGAAGGAACTGGCTTATCAGCAGTTGATAGGCGAATTGATGCAGCG TGAGTACCTGGCCGAATACGCCGATAAATTCCTGTTTGTGCCTGTCGTCACCCGCGAGCAGCACCCCGGGGCCTTGAATGGCAGGATCACGCAACTGATT GAAAATGGCGAGCTGGAGCGTGCGGCAGGCATCCCCATGACCCCGGAACATTCGCGGGTCATGCTGTGCGGCAATCCGCAGATGATCGACGACACCCGCG CCGTGCTCAAACAGCGCGACATGCGCCTGAGCCTGTCCCGCAAACCGGGGCAGGTGGCGGTGGAGACGTACTGGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCAAGGCCCGATTCATCTACACCGCGCAGGGTGCTCGTCGTTATACATAAGGCTGCCCCGACACCGATCGTGCCCGGACGCGGAGTGTCCTGAGAGGCGT TACCACGCAGTGGCGTGGGAGCGATCATCAGAGTCTCTGACTGAATACGTAACGCGTGGGAGGCGCCACCACGTCTTCGACGCAGCGCTGTCGCGCGGCA AACTCAGTGGGAGCGGACTTGTCCGCGAATGCAGTATTTCAGCCACTGCATATGCGTCGGATGTACCGGCCTTTTCGCGGACAAGTCCGCTCCCACAAAA CCGCGTTTCTTCAGTGGTTTACAGGTTGTTTGATAAGAGGCGGCTTGCCGGCGATGGCGTCAGTTCAGTCACTGATAGGTCGCTTCAGAAAAACAATCGC CGGCAAGCCGCCTCCCACACTTGCTGGTTGCAGCAGGGCTTGTGTCGAACGATGCACCCAGTTTGACGTTGATTACAGACGAGTTACGTTCACAACGGAC
|
|
| Amino Acid Sequence |
>ferredoxin-NADP reductase
MTVSEDKFTRQTLQRVTPLTPSLFTLRTTRDPGFRFRAGQFARLGLTKADGTTVWRAYSMVSSPHDEFLEFFSIVVPEGEFTSELSRLREGDSLMVEKQA FGYLTLDRFVDGRDLWLLSTGTGVAPFLSILQDFEVWEKFERVILVYSVRESKELAYQQLIGELMQREYLAEYADKFLFVPVVTREQHPGALNGRITQLI ENGELERAAGIPMTPEHSRVMLCGNPQMIDDTRAVLKQRDMRLSLSRKPGQVAVETYW
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|