Pseudomonas taetrolens DSM 21104, TU78_RS11725
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taetrolens strain DSM 21104 4_596648_47.1758, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGGCTAAAGGGCTCTTCCCAAAACACCTGCAAGGGCCTTACATTGGCGCTTGCAGAGGTGTTTGGGGAGTTGCTTGAAAAATCAGCGCTTCCCTAATCG CTGGTGATTTTTTAAACTGTTGAGTCCGCTCGCCCATCCGGGCAGCGCGCATATTGCATTTGCTACGAGGAAGACCATGGCCCGCGTAACCGTTGAAGAC TGTCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTGTCTACCAAGCGTGCCCGTCAACTGGCCACCGGCGGTAAAGAGCCTTTGGTTCAGTGGG AAAACGACAAGCCTACCGTTGTCGCCCTGCGTGAAATCGCCGAAGGCCTGATGAGCTACGAGTTTATCGCCAACGCTGAAATCGTCGAAGACGAACCGCT GTTTGCAGCGTTCGAGGACGAGTCCAACGAGGCGAACTAAGCCTATGCCCGGTCGACGTAGCACGGCGAAGGGTAAAAAGTTTTGGCAGGAGGATTCCTC
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| DNA Sequence for Gene |
>TU78_RS11725
ATGCCGAGCATAGACGCCCTCGCCGATCGCTTGTCGACGTACCTCGGTCCGGACCAGGTCAATCTGGTCCGCCGGGCGTACTTCTACGCAGAACAAGCCC ACGACGGCCAACGCCGACGTAGCGGCGAACCGTATGTCACGCATCCGCTGGCAGTCGCAAACATCCTTGCCGAAATGCATATGGACCATCAGAGCCTGAT GGCGGCCATGTTGCATGACGTGATCGAGGACACCGGTATTGCCAAGGAAGCGCTTGTCGCTCAGTTTGGCGAGACCGTGGCCGAGTTGGTCGATGGGGTC AGCAAGCTGACTCAGATGAACTTCGAAACCAAGGCTGAAGCCCAGGCTGAAAACTTTCAGAAGATGGCTATGGCCATGGCACGCGATATTCGCGTGATCC TGGTGAAACTGGCTGATCGCCTGCACAACATGCGTACCCTCGAAGTACTGTCCGGCGAAAAGCGCCGGCGGATTGCCAAGGAAACCCTGGAAATCTACGC ACCCATTGCCAATCGGCTGGGTATGCACAGTATTCGTATCGAATTCGAAGACCTTGGTTTCAAAGCGATGTACCCGATGCGCTCCGCGCGCATTTATCAG GCCGTGAAGCGCGCCCGGGGCAATCGCAAGGAAATCGTCAATAAAATTGAAGAGTCGCTCAGCCACTGTCTCGCCATCGACGGCATTCAGGGCGAGGTAA GCGGCCGTCAAAAGCATATCTACGGCATTTACAAAAAAATGCGCGGCAAGCGCCGGGCTTTCAACGAGATCATGGATGTTTACGCGTTCCGGATCATCGT CGACAAGGTCGATACCTGCTACCGCGTGCTGGGCGCTGTACATAATTTGTACAAGCCTCTCCCGGGTCGTTTCAAGGACTACATCGCCATTCCCAAAGCC AACGGCTATCAGTCGTTGCATACCACGCTGTTTGGCATGCACGGCGTACCGATCGAAATTCAGATCCGTACCCGTGAAATGGAAGAAATGGCCAACAACG GGATCGCCGCTCACTGGTTGTACAAGTCCAGTGGCGACGAACAGCACCAGGGCACTCATGCCCGTGCGCGGCAGTGGGTCAAAGGCGTGCTGGAGATGCA GCAGCGCGCAGGCAACTCCCTTGAATTCATCGAAAGCGTGAAGATCGACCTGTTCCCGGACGAAGTTTACGTGTTCACGCCCAAAGGCCGAATCATGGAG CTGCCCAAAGGCTCCACGGCGGTCGACTTTGCTTACGCAGTGCATACCGATGTGGGTAATAGCTGTATTGCATGCCGGATCAATCGCCGTCTCGCACCGC TGTCCGAGCCGCTGCAAAGTGGCTCCACGGTCGAGATCGTCAGCGCACCGGGTGCCCGCCCCAACCCGGCCTGGCTCAACTTTGTGGTCACCGGCAAGGC CCGTACGCATATTCGCCATGCCCTCAAGTTGCAGCGTCGTTCCGAGTCGGTGAACCTGGGCGAGCGTCTGCTGAACAAGGTGCTAAACGGTTTCAACAGC GCGCTGGACAAGATTCCGGCAGAGCGTGTTCAGGCAATGCTTCAGGAATACCGCCTGGAACAGATCGAAGATCTGCTTGAGGACATTGGCCTGGGTAACC GTATGGCTTACGTGGTGGCCCGGCGCTTGTTGGGCGAAGGTGAAGCATTGCCTAGCCCCGAGGGTCCGCTGGCGATTCGCGGTACTGAAGGTCTGGTGCT CAGTTACGCCAAATGCTGTACGCCGATCCCGGGTGACCCGATTGTGGGTCATCTGTCTGCGGGCAAAGGCATGGTTGTGCACCTGGACAACTGCCGCAAT ATCAGCGAAATCCGCCATAACCCCGAAAAATGCATCCAGCTTTCGTGGGCCAAGGATGTTACCGGAGAGTTCAACGTCGAATTGCGCGTCGAACTGGAAC ATCAGCGTGGCCTGATTGCGCTGCTTGCCAGCAGCGTCAACGCTGCCGATGGCAACATCGAAAAAATCAGCATGGACGAGCGCGATGGCCGCATCAGTGT GGTCCAGCTCGTCGTCAGCGTGCACGACCGTGTGCACCTGGCCCGTGTGATCAAAAAACTACGTGCTCTTACCGGGGTTATCCGCATCACCCGCATGCGT GCATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCGTTCATAAGCCCGGCCATTACAAGGAGTCATTCATGACCAAGACCGTTATCACCAGCGACAAGGCACCTGCCGCTATCGGCACTTATTCCCAGGCGA TCAAGGCTGGCAATACTGTCTACATGTCCGGCCAGATCCCGCTTGACCCAAAAACCATGGAGCTGGTTGAAGGGTTTGAAGCCCAGACTGTCCAGGTGTT TGAAAACCTGAAGTCGGTTGCTGAAGCTGCGGGCGGTTCGTTCAAGGACATCGTCAAGCTGAACATCTTCCTGACTGACCTGAGCCACTTCGCCAAGGTC AACGAGATCATGGGCAAGTACTTCGAACAGCCTTACCCGGCTCGCGCCGCCATTGGCGTTGCTGCCCTGCCAAAGGGTTCGCAGGTCGAGATGGACGCCA TTCTGGTAATTGAGTAATGCCCTCGGCGCAGCATCTTCATGCTGCGCCAACCCCCTCGCTTGTCCCCCGTTCTAAAAGGATTCCGCTATGCGCAAAGCGC
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MPSIDALADRLSTYLGPDQVNLVRRAYFYAEQAHDGQRRRSGEPYVTHPLAVANILAEMHMDHQSLMAAMLHDVIEDTGIAKEALVAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHSIRIEFEDLGFKAMYPMRSARIYQ AVKRARGNRKEIVNKIEESLSHCLAIDGIQGEVSGRQKHIYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQHQGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESVNLGERLLNKVLNGFNS ALDKIPAERVQAMLQEYRLEQIEDLLEDIGLGNRMAYVVARRLLGEGEALPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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