Pseudomonas sp. StFLB209, PSCI_RS05280

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.450.20 PAS domain - - 273 437 1.6E-8
Pfam PF13188 PAS domain IPR000014 PAS domain 286 358 0.0011
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 339 440 3.66E-7
SMART SM00086 pac_2 IPR001610 PAC motif 392 433 260.0
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 430 564 1.18E-13
Gene3D G3DSA:3.30.450.20 PAS domain - - 438 564 4.6E-14
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 442 572 9.4E-8
SMART SM00091 pas_2 IPR000014 PAS domain 445 515 0.61
CDD cd00130 PAS IPR000014 PAS domain 467 563 6.67108E-4
Pfam PF08447 PAS fold IPR013655 PAS fold-3 469 560 1.6E-7
SMART SM00086 pac_2 IPR001610 PAC motif 523 566 0.0056
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 563 704 1.45E-16
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 574 713 3.6E-12
Gene3D G3DSA:3.30.450.20 PAS domain - - 576 716 7.4E-22
SMART SM00091 pas_2 IPR000014 PAS domain 578 645 0.47
Pfam PF00989 PAS fold IPR013767 PAS fold 579 703 1.5E-6
CDD cd00130 PAS IPR000014 PAS domain 587 703 1.35387E-4
SMART SM00086 pac_2 IPR001610 PAC motif 664 706 2.5E-5
SMART SM00091 pas_2 IPR000014 PAS domain 714 783 4.1E-8
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 714 1264 0.0
Gene3D G3DSA:3.30.450.20 PAS domain - - 717 839 2.3E-27
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 718 833 1.1E-16
CDD cd00130 PAS IPR000014 PAS domain 723 824 1.44236E-10
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 726 835 3.44E-21
Pfam PF13426 PAS domain IPR000014 PAS domain 726 826 9.8E-15
SMART SM00086 pac_2 IPR001610 PAC motif 785 827 2.9E-7
SMART SM00267 duf1_3 IPR000160 GGDEF domain 827 1003 1.7E-68
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 833 1004 8.1E-45
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 835 1001 5.8E-41
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 838 999 2.6E-50
CDD cd01949 GGDEF IPR000160 GGDEF domain 839 1001 7.55469E-62
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 840 1009 2.9E-61
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 843 1004 1.18E-49
SMART SM00052 duf2_2 IPR001633 EAL domain 1013 1259 1.3E-126
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 1013 1269 1.7E-107
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 1014 1268 3.7E-102
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 1018 1265 1.44E-93
CDD cd01948 EAL IPR001633 EAL domain 1019 1259 5.1791E-118
Pfam PF00563 EAL domain IPR001633 EAL domain 1019 1254 2.6E-77

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.