Pseudomonas sp. PTA1, EW80_RS10730 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PTA1 EW80DRAFT_scaffold00009.9_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGATCAGCGACCAGAAGATCAACGACAGAATGCCCAGCACGCCGTCGTGATTGACCGCCACGCCGTAACCGCCGGAAAACACTTCCTTGAGGGTGTACAA CGGGCTCGTACCGATGTCGCCATAAACCACCCCGACCGCCGCGACCAGCATGCTCAGCGGTCTGCTTGCCGAACCCTCGGCGCCCGCCGCATGACTACTT GCCTGACCCATCCAACACTCCTGATCTCGATACCGGCTTCTTTGAAGGAAGCACTATGCTTTGAGTTGCAGCATGCGCTGTTTTACCTGTTGTTACAGAC CAATGATTGACTGCAAGAAATCGGTAAAGCTCAACGGCGCGAAGCATAGCGCAGCACTCGTCGTATTTCCCCGTATAAAGCTGGTCAAGTGCGTTGCCCG CCGCTAGAATTGCGCACTTTTTGATCAGAGGCGCGCCCTAAGCGCCCATCCGTCGGCTTGCGCATCAAGCAAGCGACGTCACAAAACACCGAGGTTAGAC
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| DNA Sequence for Gene |
>EW80_RS10730
|rimO
ATGTCCACCACTCCTGCGCCGGCCAATCCAAAGGTTGGCTTTGTATCTCTGGGTTGCCCGAAAGCACTGGTCGACTCCGAGCGCATCCTGACCCAGCTGC GCATGGAAGGCTATGACGTGGTGTCCACCTATCAGGACGCCGACGTCGTGGTGGTCAACACCTGCGGTTTCATCGATTCGGCCAAGGCCGAGTCGCTGGA AGTGATTGGCGAAGCGATCAAGGAAAACGGCAAGGTCATCGTTACCGGCTGCATGGGCGTGGAAGAAGGCAACATCCGCAACGTGCACCCGAGCGTGCTG GCCGTGACCGGCCCGCAGCAGTACGAGCAAGTGGTCAACGCCGTGCACGAAGTGGTGCCGCCGCGTCAGGATCACAACCCGCTGATCGACCTGGTGCCGC CGCAAGGCATCAAGCTGACCCCGCGCCACTACGCGTACCTGAAGATTTCCGAAGGCTGCAACCACAGCTGCTCGTTCTGCATCATCCCGTCGATGCGCGG CAAACTGGTCAGCCGTCCGGTTGGCGATGTGCTCGACGAGGCGCAGCGCCTGGTCAAATCCGGCGTCAAAGAATTGCTGGTGATCTCGCAAGACACCAGC GCCTACGGCGTCGACGTGAAATACCGCACCGGTTTCTGGAACGGCGCGCCGGTGAAAACCCGCATGACCGAACTGTGCGAAGCGCTGAGCACGCTGGGCG TCTGGGTGCGCCTGCACTACGTTTACCCGTACCCGCACGTCGACGAGCTGATCCCGCTGATGGCCGCCGGCAAGATCCTGCCGTACCTGGATATCCCGTT CCAGCACGCCAGCCCGAAAGTCCTGAAGTCGATGAAACGCCCGGCGTTCGAAGACAAGACCCTGGCACGCATCAAGAACTGGCGCGAAATCTGCCCGGAC CTGATCATCCGTTCGACCTTCATCGTCGGCTTCCCGGGCGAAACCGAGGAAGACTTTCAGTACCTGCTGAACTGGCTGACCGAAGCCCAGCTCGACCGCG TCGGCTGCTTCCAGTACTCGCCGGTGGATGGCGCACCGGCCAACGATCTGGATCTGGAAGTGGTCCCGGACGACGTCAAGCAGGATCGTTGGGAGCGCTT CATGGCGCACCAGCAGGCGATCAGCTCGGCACGCCTGCAAATGCGCATCGGTCGTGAGATTGAGGTGCTGGTGGATGAGGTGGACGAGCAAGGCGCGGTC GGCCGTTGCTTCTTCGACGCCCCGGAAATCGATGGCAACGTGTTTATCGACAACGGCAGCAACCTGAAGCCGGGCGACAAGGTCTGGTGCAAGGTGACTG ATGCCGACGAATATGATTTGTGGGCTGAGCAGATCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCCGAGCACCCTGCAGGAGCTGCCGAAGGCTCGGGCCGCGATCGGACGATCTCTTGATCTTGAAAGTCAAAAGATCGCAGCCTCGTTTCACTCGTCAGC TCCTACAGGGATCGCTGTATTGAAAGCCTCGCTCGATGCGGGGCTTTTTTGCGGCTATCGTTTAGCGGGGGACGGACTCCCTTGAACGGCACAAGAGGCA CACGCACATGCGTCAGCATTCGGTCATCCACACACCGAAAATCAGCGATTACGAAGAACTGACCCGGGTCTGGGAGGCCTCGGTCCGTGCAACTCATCGG TTCCTGCCGGACAGCTATATCGAGCTGCTGCGCAATCTGGTGCTCACCCGCTATCTCGACGCGGTAATGCTGATCTGCACCAAGGACCGCCAGCAGCGCA TCACCGGGTTTGCCGGTGTGGCGGCGGGCAAGATTGAAATGCTGTTCATCGATCCCGACCATCGTGGTCAAGGCTTGGGCAAGCAGTTGCTGCGCTATGC
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase RimO
MSTTPAPANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRNVHPSVL AVTGPQQYEQVVNAVHEVVPPRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAQRLVKSGVKELLVISQDTS AYGVDVKYRTGFWNGAPVKTRMTELCEALSTLGVWVRLHYVYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKSMKRPAFEDKTLARIKNWREICPD LIIRSTFIVGFPGETEEDFQYLLNWLTEAQLDRVGCFQYSPVDGAPANDLDLEVVPDDVKQDRWERFMAHQQAISSARLQMRIGREIEVLVDEVDEQGAV GRCFFDAPEIDGNVFIDNGSNLKPGDKVWCKVTDADEYDLWAEQI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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