Pseudomonas weihenstephanensis DSM 29166, TU86_RS06140

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006508 proteolysis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00834
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004252 serine-type endopeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00834
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.30.42.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR22939 SERINE PROTEASE FAMILY S1C HTRA-RELATED - - 33 368 3.2E-97
SUPERFAMILY SSF50494 Trypsin-like serine proteases IPR009003 Peptidase S1, PA clan 33 267 1.31E-70
Gene3D G3DSA:2.40.10.120 - - - 34 269 4.4E-84
NCBIfam TIGR02037 JCVI: Do family serine endopeptidase IPR011782 Peptidase S1C, Do 35 474 0.0
FunFam G3DSA:2.40.10.120:FF:000007 Periplasmic serine endoprotease DegP-like - - 35 269 8.4E-97
Pfam PF13365 Trypsin-like peptidase domain - - 104 237 6.4E-35
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 113 125 2.5E-51
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 134 154 2.5E-51
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 174 198 2.5E-51
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 208 225 2.5E-51
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 230 247 2.5E-51
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 234 359 8.02E-26
Pfam PF02163 Peptidase family M50 IPR008915 Peptidase M50 246 392 1.6E-9
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 274 375 1.0E-27
FunFam G3DSA:2.30.42.10:FF:000037 Periplasmic serine endoprotease DegP-like - - 274 375 4.3E-33
CDD cd00987 PDZ_serine_protease - - 276 365 1.47969E-25
SMART SM00228 pdz_new IPR001478 PDZ domain 276 358 8.0E-16
Pfam PF13180 PDZ domain IPR001478 PDZ domain 278 367 3.5E-16
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 316 328 2.5E-51
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 385 478 5.6E-18
SMART SM00228 pdz_new IPR001478 PDZ domain 388 467 2.9E-11
CDD cd00987 PDZ_serine_protease - - 389 474 9.45483E-17
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 389 476 1.06E-14
Pfam PF13180 PDZ domain IPR001478 PDZ domain 390 470 7.3E-10

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.