Pseudomonas sp. CB1, TD31_RS15235
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CB1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTTTCTGAAACCATCAGCTCCGGGGTGATCGACGAAGCCGTGCAACAGAAGGCCACGGCCTTGCGGGTGCTTACCGTGGATGACTCTTCCGTGGCGCGCA AGCAGGTCAGCCGTTGCCTGGAAACCGTAGGCGTGGAAGTGGTGGCGCTCAATGATGGGCGGCAAGCGTTGGAATATCTTCAGGCGATGGTCGCCGAGGG CAAGGACCCTAACGAAGAATTCCTGATGCTAATCTCGGATATCGAAATGCCTGAAATGGATGGCTATACGCTTACCGCGGAAATCCGTAGCGATCCTCGA CTGCAGAAGCTGCATATCGTGTTGCACACGTCCCTGTCAGGGGTGTTCAACCAGGCTATGGTGAAGAAGGTCGGCGCTGACGACTTCTTGGCCAAATTCC GTCCGGACGATCTCGCATCCCGGGTGGTCGAACGTATCAATGCAAAAGGTTGATCGGGCTGCGGCCCGGCGAAGTTTCAACAACAGAAGAGGCGGCACCC
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| DNA Sequence for Gene |
>TD31_RS15235
TTGGCTACGGCAAATTCCGATTTTGAACAGTTCAGGGCATTCCTGGAAAAGGCCTGTGGCATCGTGCTGGGCGAGAACAAGCAGTACCTGGTGTCCAGCC GCCTCAACAAGCTCATGGAGCAGCAGGGCATCAAGAGCCTGGGTGAGCTGGTGCAGCGCATCCAGAGCCAGCCCCGCGGCGGCCTGCGCGAGCAGGTGGT GGATGCGATGACCACCAACGAAACCCTGTGGTTCCGGGATACCTACCCGTTCGAAGTGATGAAGAACAAGGTACTCCCGGAAATGATCAAGGCCAGCCCC GGCCAGCGGCTGCGGATCTGGTCGGCGGCCTGTTCGTCCGGGCAGGAACCCTATTCGCTGTCGATGACGGTGGAAGAGTTCACTCAGGCCAATCCGGGGC AGCTCAAGGGCGGGGTACAGATCGTGGCCACCGACCTGTCGCCTTCGATGCTGGCGGCGTGCAAGGGCGGAGAGTATGACAGCCTGGCCATCGGCCGTGG CCTGTCACCCGAACGCCTGCAGCGCTACTTCGACACCAAGCCCGGCAACCGCTGGGCGGTAAAGGCGCCCATTCGCAGCAGGGTGGAGTTCCGCCCGATC AACCTGCTTGAAAGCTACATGTCCCTGGGCAAGTTCGACGTCGTGTTCTGCCGCAATGTGCTGATCTATTTCTCGGCGGACGTGAAGAAGGACATCCTGT CCCGCATTCATGGCACCCTCAAGCCAGGCGGTTACCTGTTCCTTGGTGCCTCGGAGGCCCTCAATGGGTTGCCGGACAAGTACAAGATGGTCCAGTGCAG CCCCGGCATCATCTACCAGGCGATCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGCCGCTGCGCCGCCGGAATTCCAGCGGCGCAGGGCACCTGTATTCAAGATAATGCTACGTCATCCTGACTTCATTGAGCAGTTCAGGGTGGCGGTCAA GCAGCTTGAGAAGCTTTACCAGTGCCAGTGGTGGCTTGGTCTTACCGTTTTCGTAGCGGGAAAACGCATTGACGCCGCCTCCGAAGATCTCGCCAGCCTC ACGTTGATCGAGCGACAGTTTCTTGCGCACCTTGGCAATGAAGCCCGGATCAACGATAGAAGCGTTGACCTCCTTGTTGAAAGCCAGCATGGAAGCGCTA ACGGTTGCGGATTCTGCGGCGCCAAGCACTGCTTCTCCACATTCGGGACAGAAATTTCCTTCGACCTGCATGATCATGGTCGAGGCGCCTTTATAGGCAT ACGGCAGATCCCTGGTGTCATGAATCAGTTCGGCGGCGCCGCAATTTGGGCACAGCATGGTCATAACTCCTTGAACGAAATTATCAGTACATCATCGATG
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| Amino Acid Sequence |
>chemotaxis protein
MATANSDFEQFRAFLEKACGIVLGENKQYLVSSRLNKLMEQQGIKSLGELVQRIQSQPRGGLREQVVDAMTTNETLWFRDTYPFEVMKNKVLPEMIKASP GQRLRIWSAACSSGQEPYSLSMTVEEFTQANPGQLKGGVQIVATDLSPSMLAACKGGEYDSLAIGRGLSPERLQRYFDTKPGNRWAVKAPIRSRVEFRPI NLLESYMSLGKFDVVFCRNVLIYFSADVKKDILSRIHGTLKPGGYLFLGASEALNGLPDKYKMVQCSPGIIYQAI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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