Pseudomonas sp. 21, UB43_RS05640

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. 21 contig2, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ACCGACCGCGAGGCCGAGCGTGGTGCCGACCAGGTGATCGCCTGGACGCTCTACGCGGCGGACCGCCCGCTGAGCTTCCCCGGCAGCGATAGCCAGCGCC TGCACTGGAATGTCGGCGAGCCGATGAAGCTGTTGCTGCGCTGGGCCAAGGACAGCCCGCAACGGCCGGATATCGACCCGCAGCAGGCAAGCATGGCCGT GGCGGACCTGGAAGTGGGCTGGGAGTACGGCGGCCCCTGGGCGCTGATGCGCCTGCTGCGTTCGCACCTGATCCTGCAGCGCCAGCCCAGCGCCGACTAC ACCGACTTCCCGCTCGCGTTGCAGGTGCCGGTCCGTGCGCCGAACAGTCGCGAGCCCGAGGCGCGGATGTTCCTGCGCGTGTCCCTGATGACCCAGGACG CCAAGCAGCCGCTGTCCGTCCAGCCCTTGCCCGTACGCGCGCCGCGCACGCCCTTCAGCGGGGTCGGCGTGGCGTCCTTTGCCGGCGCCCAGGAGTTGCC
DNA Sequence for Gene
>UB43_RS05640
ATGATTTCAGACGAGGCGCTGCAAGCGCTCCTGCAACCGCTGTCGGGCGAGTCGCCCTGCGGGGAGTCGCTGCGCCATGACCCGCTGATGGACCGCCTGC GCGAGCTGCGTCGCGAGGAGGATACCGAGCTGCCGGCCGGTGTCTGGCAGGCCGAGCCCAAGCGCGCGGACTGGTTGGCGCTGGCGGAGCTCGCCGAGGA GTTGCTGGCGCGGCGCAGCAAGGACCTGACCATCGCCGGTTTTCTGGGCGAGGCCTGGATAGTCACCCACGGCCCTGCGGGCCTCGCCGCCGCACTGGGC CTGCTGGCCGGTCTTTGCGATGCGTTCCCTGAACAGCTGCACCCGCAGGCCACCGACGGTGACCAGGAGTGGCGTGCGGCGCCGCTCGCCTGGTTGGCGC GGCGCTACACCGAACTCCTGCTCACCCGCGTGCCGCTGTGCAGCGGCTGGCCGAAGACCACCCTGCATGGCTGGCAGGAACTGCAGCGACGACAGGTGCA GGCCAGCGACAACAAGGTCGACAAGGTGGCGGCGGAGAACGCGCGACAGGAGCAGAAACGGCTAAACGAATCGATCCGCAGCGGTGCGGTGGATGGCTGG GCGGCGACGCTGGCCCAGTTGAACAGTGCGGCCGCTCACCTGCGACGCCTGGATGCCTGGTGTGACCTCCAGCTCGGCGATGCCGCACCGAGCCTGCACC AACTCGCCGCGTCCATCGACGCTTTCAGCAACGTCATCCAGGGATGCAAGGCCATGGCCCCGCAAGATTACGTACCTGCCGCCGCAGCGGAAAACCCCGC GGTGCCGGAATCGGTTTCCGTGTCGGCTTCCCCGCTTCCCGCCGGCGGCGCTCCGCAGAACCGCGAAGAGGCCTACCGGCAGCTCACCGCCATCGCCGAG TACCTGGCGCGCACCGAGCCGCACAGCCCGGTGCCCTACATCATTCGTCGGGCGGTGGAGTGGGGCGGCATGCCGCTGAGTGCGCTGATGGACGAACTGG TCCACGCCGACCCCGAGGCTCGCCGGGTCTGGGTCATGCTGGGCGTGTTGCGCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCGGGTAGCAGGTCGGTGCCATCGTCAGTGACCGCAGGCATCGAGGCATTGCCGCGCGTGGCGCTGGTCCGGTGAGTCGAAACCCTCGGTGAAGCGCTGG TAGACCGGCTCCAGCAGTTGCCGCGCGGCTTGCGGTTGTCCCTGCGCACTCCACAGCTGCGCCAGGCAGGTGGCCGAGCGCAGCTCCCAGGCCAGTGCAC CTTGTTCCTGCGCCAGTGCCAGGGCGCGGGTCAGCAGGGTTTCGCCGCCGAGCAGGGATTCGCGGTCGCCGCGCGCCAGCAGGGTGACTGCCTCGTTGCG CAGGATTTCCGCGGCGCACCAGCCTGCCGCGCCGGTTCGTGCGCGCATCAGCTGCGCCTGATCGGAGGGCAGGAGGCGACCGCCGAGGGTCTGCACGATG TCGCGCACCAGGCCGACGGCGGGTGCCGTGGCGCCCGCCGTTTCTTCGAGCTGCATGGCCCACGCATAGTGCCGCGCCCAGTCGGTGAACAAGGGCACGC
Amino Acid Sequence
>type VI secretion protein
MISDEALQALLQPLSGESPCGESLRHDPLMDRLRELRREEDTELPAGVWQAEPKRADWLALAELAEELLARRSKDLTIAGFLGEAWIVTHGPAGLAAALG LLAGLCDAFPEQLHPQATDGDQEWRAAPLAWLARRYTELLLTRVPLCSGWPKTTLHGWQELQRRQVQASDNKVDKVAAENARQEQKRLNESIRSGAVDGW AATLAQLNSAAAHLRRLDAWCDLQLGDAAPSLHQLAASIDAFSNVIQGCKAMAPQDYVPAAAAENPAVPESVSVSASPLPAGGAPQNREEAYRQLTAIAE YLARTEPHSPVPYIIRRAVEWGGMPLSALMDELVHADPEARRVWVMLGVLR
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site