Pseudomonas sp. 21, UB43_RS05610

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. 21 contig2, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCTGCCCCTGGTCGTGGGCATCCTCGCCGACCTCTCCGGCAAGCCGGTCGCTCCCCTGCCCAAGCTCGGCGAGCGCCGCTTCACCGAGATCGACCGTGAC AACTTCAACGCCGTGCTCTCGTCCATCGGACCGCGCGTGGCGCTGCAGGTCGACAACACCCTGAGCAACGACGGCAGCCGGCTCAACGTCGAGCTGAACT TCAAACACATCGACGACTTCGACCCGGTGAGCATCGTCAACCAGGTCGTACCGCTGCGCCGCCTGTTCGAAGCCCGCCAGCGCCTGCGCGACCTGCTCAC CAAGCTCGACGGCAACGATGAGCTGGACCAGCTGCTGCAGGACGTGGTGAGCAACACCGAGGGCCTGCAGGAAATCCGCGCGACCCACCCGGTGACCGCC GATGCCGGCGCCGCCAACGACACGGCCCAGGCCGCCGCCGACGAAGGCGAAGCACCTGCCGAACCGCAAGCCTGACCCCGCCCGCAAGGAGAGCACAGCA
DNA Sequence for Gene
>UB43_RS05610
ATGGCCAAACCCAGCTCCGCCGCGGCGCAAGGCGCCGAAGGCAGCACCCAGACCCTCGACCTGCTCGACCGCATCATCGCCGACGGCCGCATGGCCCACG ATGACAGCCAGCAGGAATACGCCCGCGACATGCTCGCGGAGTTCGCCACCCAGGTCCTCGACGAAGGCATGGCCGTCAGCAAGGACACCGTGGCCATGAT CAACGAGCGCATCGGTCGCATCGACGAACTGATCAGCGCCCAGCTCAACCAGATCCTGCACCACCCCGAACTGCAGCAGCTCGAATCTTCCTGGCGCGGC CTGCACCAGCTGGTGCAGAACAGCGAGACCGGCTCGCGCCTCAAGCTGCGCCTGCTCAACGTCAGCCAGCAGGACCTGCAGAACGACCTGGAGAAAGCCG TCGAATTCGACCAGAGCGCGCTGTTCAAGAAAATCTACGAAGAGGAATACGGCACCTTCGGCGGGCACCCCTTCAGCCTGCTGGTGGGCGACTACTCCTT CGGCCGTCACCCGCAGGACATCGCCCTGCTGGAGAAACTCTCCAACGTCGCCGCCGCGGCCCACGCGCCCTTCATCGCTGCGGCCAGCCCGCGCCTGTTC GACATGGGCAGCTTCACCGAGCTGGCGGTGCCGCGTGACCTGAGCAAGGTCTTCGAGAGCCTGGAGCTGATCAAGTGGCGCTCGTTCCGCGAGAGCGAGG ATTCGCGCTACGTTTCCCTGGCCCTGCCGCGCTACCTGGTGCGCCTGCCCTACGGCCCGGAAACCCTGCCGGTGGAAGGCATGAACTTCATCGAGGACGT GGACGGCACCGACCACGCCAAGTACCTCTGGGGCAACGCCGCCTGGGTCATGGCCCAGCGCATCACCGAAGCCTTCAGCAAGTACGGCTGGTGCGCGGCG ATCCGCGGCAGCGAAGGCGGCGGCGCCGTCGAAGGCTTGCCGGCCCACACCTTCCGCACCCAGGCGGGCGACCTGTCGCTCAAATGCCCGACCGAGGTGG CCATCACCGACCGCCGCGAGAAGGAGCTCAACGACCTGGGCTTCATCGCCCTGTGCCACAAGAAGAACACCGACCTCGCCGTGTTCTTCGGCGGCCAGTC CACCAACAAGCCGCGCCAGTACAACACCAACGAGGCCAACGCCAACGCGCGGCTCTCGGCGATGCTCCCGTACGTGCTGGCGGCCTCGCGCTTCGCCCAT TACCTGAAGGTGATCATGCGCGACAAGGTGGGCAGCTTCATGACCCGCGACAACGTGCAGACCTACCTCAACAACTGGATCGCCGACTACGTGCTGATCA ACGACAACGCCCCGCAGGAGATCAAGGCGCAGTACCCGCTGCGCGAAGCCCGCGTGGATGTCAGCGAAGTCGCCGGCAAGCCAGGGGTCTACCGCGCCAC GGTGTTCCTGCGCCCACACTTCCAGCTCGAGGAGCTGACCGCCTCGATCCGCCTGGTAGCCAGCCTGCCGCCGCCGGTCGCAGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCAGGGGGCCGCCCGTGCGGGCGGCCCCTTCACCTGATCCCACCTCTTTCAAGCAGCGGAGTTTTCCACCATGGATGCGATACTTCTCGACCTGGGCGA CGACATCAAGGGCGACAGCCTGCTGGCCGGCTTCGAAAACAAGATCGAAATCATGTCGTACAGCCACAACGTCGCCATGCAGGTGACCAACGATGTCAGC AACTCGGAGCGCACTTCCGGCAAGCCGCACATCGGCGAATTCACCCTGACCAAGTTCGTCGACACCTCGACCCCGACGCTCAACGAATACTGCTGCTCCG GCAAGGCCATCCCCACCGCCACCCTGACCATCGGCCGCAACGCCGCCGAGGGCGACGGCAAGATCATGCCCTTCATCACCTACACCCTGAACAACGTGGT GCTGTCCAACGTCAGCGTCAGCGGTGGCGCCGGTGGCAAACCGGTGGAAACAATGTCGTTGAACTTCACCAAGATCAAATGGGAGCTCACGGCGCAAAAG
Amino Acid Sequence
>type VI secretion protein EvpB
MAKPSSAAAQGAEGSTQTLDLLDRIIADGRMAHDDSQQEYARDMLAEFATQVLDEGMAVSKDTVAMINERIGRIDELISAQLNQILHHPELQQLESSWRG LHQLVQNSETGSRLKLRLLNVSQQDLQNDLEKAVEFDQSALFKKIYEEEYGTFGGHPFSLLVGDYSFGRHPQDIALLEKLSNVAAAAHAPFIAAASPRLF DMGSFTELAVPRDLSKVFESLELIKWRSFRESEDSRYVSLALPRYLVRLPYGPETLPVEGMNFIEDVDGTDHAKYLWGNAAWVMAQRITEAFSKYGWCAA IRGSEGGGAVEGLPAHTFRTQAGDLSLKCPTEVAITDRREKELNDLGFIALCHKKNTDLAVFFGGQSTNKPRQYNTNEANANARLSAMLPYVLAASRFAH YLKVIMRDKVGSFMTRDNVQTYLNNWIADYVLINDNAPQEIKAQYPLREARVDVSEVAGKPGVYRATVFLRPHFQLEELTASIRLVASLPPPVAA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site