Pseudomonas lini DSM 16768, TU81_RS05610
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lini strain DSM 16768 2_928492_19.6844, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCCTGTGTCTGGCGGCGTTGTATGAAAGCTGGTCGATCCCGATCGCGGTGATGCTGGTGGTACCGCTGGGGATCATTGGTGCACTGATGGCGACCAGCC TGCGTGGCCTGTCCAACGACGTGTACTTCCAGGTGGGGCTGTTGACCACCATCGGTCTGGCGGCGAAAAACGCCATTCTGATCGTCGAGTTCGCCAAGGA ACTGCATGAGCAAGGACGTAGCCTGCGCGATGCCGCGATCGAAGCCTGCCGGATGCGTCTGCGACCGATCATCATGACCTCGCTCGCCTTCGTGCTCGGT GTGGTTCCACTGGCCATTTCCACGGGCGCAGGTTCGGGTAGCCAACATGCGATCGGTACCGGGGTGATTGGCGGTATGATCACGGCCACTGTGCTGGCGA TCTTCTGGGTCCCATTGTTCTTCGTCACCGTGTCGTCCATGGGCCAGCGCAAAATCGCTGACCAGGATGACGCTATTGAACCTTCTAAAGAGGCTGGCTA
|
|
| DNA Sequence for Gene |
>TU81_RS05610
ATGAGCAAGTCGCTACTCTCCATCGCAGTCGCCGCCTTCGTGCTGAGCGGCTGCTCGCTGATACCCGATTATCAGCAGCCAGAAGCACCGGTGGCGGGCC AATACCCGCAAGGCCCGGCGTATTCGCCGGCCCAGGCGCCTAACCAGGCCGCCGCCGAACAGGGCTGGAAGCAGTTTTTCCACGACCCGGCGCTGCAACA GCTGATTCAGACCGCGCTGGAGAACAACCGTGACCTGCGCGTCGCGGCGCTGAACATCGACGCTTATGCGGCTCAATACCGCATCCAGCGTGCCGATCTG TTCCCGGCCGTTTCGGCCACCGGCAGCGGCAGCCGTCAGCGAGTTCCGGCACGGGCCTCGCAAACCGGTGAAGCGGCCATCAGCAGTTCCTACTCGGCCA CTGTCGGCATCAGCGCTTATGAACTCGACCTGTTCGGTCGGGTTCGCAGCCTGAGCGAAGAAGCCCTGCAGAAATACTTCGCCACTGAAGAAGCGCGCCG CAGTACGCAGATCAGTCTGGTGGCCAGCGTGGCCAATGCCTACCTGACCTGGCAGGCTGACAAGGAGCTGCTGAAACTCACCCAGGAAACCCTCGGGGCC TTCGAGGAGAGCTACAAGCTCACCTCGCGCAGCAACGAAGTGGGTGTAGCCTCGGCGCTGGATCTGGCCCAGTCGCGTACCTCGGTGGAAAACGCCCGCG CACAACTGGCCAGATACACCCGTCAGGTCGCCCAGGATGAAAACAGCCTGGTGCTGCTGCTCGGCACCGGTATCCCGGCCAATCTGCAAGCGGCCAAGCC ACTGTCGGATGACGTGCTGAGCGAAGTGCCGGCCGGCCTGCCGTCGGACTTGCTGCAACGTCGTCCGGACATCCTTCAGGCCGAGTACAACCTGAAGGCT GCCAACGCCAACATCGGTGCGGCACGGGCTGCGTTCTTCCCGAGCATCAGCCTGACCGCCAATGCCGGTTCCCTGAGCCCGGACCTGTCCGGTCTGTTCA AGGGCGGTTCGGGCACCTGGTTGTTCCAGCCGCAAATCAACCTGCCGATCTTCAACGCCGGCAGCCTGCGCGCCAGCCTGGATTACTCCAAAATCCAGAA AGACATCGGCGTGGCGAACTACGAGAAGTCCATTCAAACGGCCTTCCAGGAAGTCGCCGATGGCCTGGCTGCCCGCCAGACCTACACCGAACAGTTGCAG GCTCAGCGTGACTTCGTCAGCGCCAACCAGGACTACTACCGTCTGGCCGAGCGTCGTTATCGCATTGGTGTCGACAGCAACCTGACCTTCCTCGATGCCC AGCGTCAGCTGTTCAGTGCTCAACAAGCGCTGATCACCGACCGTCTGGCGCAGCTGACCAGCGCGGTCAATCTGTACAAGGCATTGGGTGGTGGCTGGAA TGAACAGACGGCGAAGAACGAGCCGTTGAAAGAAGAAGCGCCGAAGATGAAATTGTTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TAGCGCGGTAAACACGAAGCCCACCGATTGGTGGGCTTTTTGTTGGCTGCGGGAAAAGCCAGATCAAAAGATCGCAGCCTTCGGCAGCTCCTACGCAGGT ACGCGATTCCATGTAGGAGCTGCCGAAGGCTGCGATCTTTTGATCTTTTGCTGTTCGATAATCGCCCAGAACCCGTCCTCCCCCGATTGAACCATTTAGT CCGTTTACCTCACCATCTGTCATACAAAACCAATAACAACAGGTTCAACACCATGCCCCCGCGCCCTGCCCTGCCCGGCTGACTTCGCCCCGCTTTTCTG AATTCGAATCTTTTGTCTGCAACCCGAACGTTGCGGCATCGCCCTGTTTCACCTCCAGGAATTAGAGAGACCCGAGCCCATGACGCCTTCCACGCAGTAT TTCTTACCCAGCCTGATCGCCATCGCACTGGCCGGTGCGGCCCTGCCCGCCATGGCCGAGGAAGTCGGTTTTGTCGAAGGTGCCAAGGTCAACCTGAACC
|
|
| Amino Acid Sequence |
>adeC/adeK/oprM family multidrug efflux complex outer membrane factor
MSKSLLSIAVAAFVLSGCSLIPDYQQPEAPVAGQYPQGPAYSPAQAPNQAAAEQGWKQFFHDPALQQLIQTALENNRDLRVAALNIDAYAAQYRIQRADL FPAVSATGSGSRQRVPARASQTGEAAISSSYSATVGISAYELDLFGRVRSLSEEALQKYFATEEARRSTQISLVASVANAYLTWQADKELLKLTQETLGA FEESYKLTSRSNEVGVASALDLAQSRTSVENARAQLARYTRQVAQDENSLVLLLGTGIPANLQAAKPLSDDVLSEVPAGLPSDLLQRRPDILQAEYNLKA ANANIGAARAAFFPSISLTANAGSLSPDLSGLFKGGSGTWLFQPQINLPIFNAGSLRASLDYSKIQKDIGVANYEKSIQTAFQEVADGLAARQTYTEQLQ AQRDFVSANQDYYRLAERRYRIGVDSNLTFLDAQRQLFSAQQALITDRLAQLTSAVNLYKALGGGWNEQTAKNEPLKEEAPKMKLF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|