Pseudomonas knackmussii B13, PKB_RS04390

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pkc02025	Biofilm formation - Pseudomonas aeruginosa	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PANTHER	PTHR33121	CYCLIC DI-GMP PHOSPHODIESTERASE PDEF	-	-	205	676	0.0
SMART	SM00267	duf1_3	IPR000160	GGDEF domain	239	411	4.7E-47
NCBIfam	TIGR00254	JCVI: diguanylate cyclase (GGDEF) domain	IPR000160	GGDEF domain	249	409	9.4E-30
Gene3D	G3DSA:3.30.70.270	-	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	249	417	4.2E-48
CDD	cd01949	GGDEF	IPR000160	GGDEF domain	251	409	8.87372E-50
Pfam	PF00990	Diguanylate cyclase, GGDEF domain	IPR000160	GGDEF domain	251	407	1.2E-40
SUPERFAMILY	SSF55073	Nucleotide cyclase	IPR029787	Nucleotide cyclase	255	411	6.75E-41
Coils	Coil	Coil	-	-	415	435	-
SMART	SM00052	duf2_2	IPR001633	EAL domain	421	667	8.9E-121
Gene3D	G3DSA:3.20.20.450	EAL domain	IPR035919	EAL domain superfamily	421	684	2.0E-102
FunFam	G3DSA:3.20.20.450:FF:000001	Cyclic di-GMP phosphodiesterase yahA	-	-	422	677	1.2E-103
SUPERFAMILY	SSF141868	EAL domain-like	IPR035919	EAL domain superfamily	426	674	3.66E-93
Pfam	PF00563	EAL domain	IPR001633	EAL domain	427	662	1.6E-74
CDD	cd01948	EAL	IPR001633	EAL domain	428	667	6.5581E-111

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.