Pseudomonas aeruginosa LESB58, PALES_08941 (cupB5)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa LESB58 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGTTCTGGGTCAACCTGCTGGAGGTGCCGGGGCGGGAGGACGGCAGCGGCAACCTGCTGCTGGTGAGCTACCGCCTGCGGATGAAGCTCCTGTTCCGTCC GCAGGGTCTGGCCGGCGATCCGCGAGCCGCCGCGCGCCAGGTCGTCTGGCGCCTGCGTCCGGCGGTACGGCCGGGGCAGCGGGCGCTGCTGGAGGCGGAC AACCGCAGTCCCTATCACGTTTCCCTGGTGCGCCTGGAGCTGGGCGAGGGCGACCTCGCCATGTCCCTCGGCAGCGTCACCCTGCCGCCTTTCGCCCTTA CCCCGTTGAGTCTGCCGGCCGTGCCCGGCGAGGCGGCGCGGGTCCATTTCGATGCGGTGGGGGATGACGGCCAGATCGAGCGCGGCGACGCGCCGGCAGA GAGATACCCGTAGGAGTTCGGCAGGGCCCGGGGAGTTGGGCTCCTGCCGTAGCACGGCCCTGCGAATAGGTCGCGGGGTTTCACTGGAGGAAGGAAGCAC
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| DNA Sequence for Gene |
>PALES_08941
|cupB5
ATGAACAAATGCTATGCACTGGTCTGGAACGTATCCCAGGGCTGCTGGAACGTCGTCAGCGAAGGCAGTCGCAGGCGCGGCAAGCCCGCCGGCGCCAAGG CGGCGATCGCCTCCGCCCTGGCCCTGCTGGGCGCCACGGCCCTGGCTCCGGCCTATGCGCTGCCAAGCGGGGGAACGGTGGTCGGCGGGAGCGCGAACGG GGAGATACACCTGTCGGGCGGCAACAGCCTGTCGGTCAACCAGAAGGTCGACAAGCTCATCGCCAACTGGGATTCCTTCAGCGTTGCCGCCGGCGAGCGG GTGATCTTCAACCAGCCGAGCAGTAGCTCGATCGCCCTGAATCGGGTGATCGGCACCAAGGCCAGCGATATCCAGGGTCGGATCGATGCCAACGGCCAGG TCTTCCTGGTCAACCCCAACGGCGTGCTCTTCGGTCGCGGTGCCCAGGTCAATGTCGGTGGCCTGGTGGCTTCCACGCTGGACATCACGGATGCCGAGTT CAACGGCAACTCCTCCAGATACCGTTTCACGGGTCCCTCTACCAACGGTGTCCTCAACCACGGGGGCGCCATCACCGCGGCGGAAGGCGGCAGCATCGCC CTGCTGGGCGCGCAGGTCGACAACCGCGGGACGGTCCTGGCGCAGATGGGCGGTGTCGGGCTCGGCGCGGGCAGCGACCTGACGCTGAATTTCGACGGCA ACAAGCTGCTCGACATCCGCGTCGACGCCGGGGTCGCCAATGCGCTGGCAAGCAACGGCGGCCTGCTCAAGGCCGACGGGGGGCGAGTCCTGATGGCGGC CAGGACCGCCAATGCGCTGCTCAACACGGTGGTGAACTCCCAGGGTGCCATCGAGGCCCGTTCGCTGCGCGGCAAGAACGGGCGGATCGTGCTCGATGGC GGCCCGGACGGCAAGGTCATGGTGGGAGGCGCCTTGTCCGCCAATGCGCTGAACGGACCGGGGCACGGCGGCACGGTCGAGGTCCGGGGGCAGGCGGTGG AGGTGGCCCTGGGCACCCAGGTGAACACGCTCGCCAGCAATGGCCTCAACGGCACCTGGAAGATTGCCGCCGACAAGATCGACGTGCGCCCATCGGCGGT GTCGGATGGCGTCACCGTTCATGCCGACACCCTGTCGCGGAACCTGGCGAGCACCAATATCGAACTGGTTTCGACCAAGGGCGACCTGGACCTCGACGGC TCGGTGAGCTGGGCATCGGGCAACCGGCTGGGGCTGGGCTCCGCGGCCGACCTGACGCTGAATGGCAGGCTGAATGCCAGTGGCGCCAAGGCTGGGCTGG AGCTGAAGGCCGAAGGCGCTATCGATATCAATGACAAGATCGTTCTCGGCGGGGCTGGCAGCGCGCTGGCCATGGATGCCGGCGAAGGCCACCGGGTGAA CGGCACGGCGTCGGTCTCCCTGGCCGGGGCCAACGCGACCTACGTCTCCGGCGGCTATTACTACACGGTGGTGCAGAACCTGGCGCAGTTGCAGGCGATC AACAAGAACCTGGACGGCCTGTACGTGCTCGGCGGCAATATCCTGGGCGGCAGCTATTACTGCACGGCACTGCAGTCCATCGGCGGGCCCGCCGGCGTCT TCAGCGGCACCCTGGACGGTCTCGGCAACAGCATAGGCAATCTCTCGATCAGCAACACCGGGCCGAATGTCGGGCTGTTCGCCCGCTCCTCGGGCACCCT GAGCAACCTGAAACTGAACAACCTGCGGGTATCCGATAACACCTACGGCTCCGGTCCGTCTTCGCTCGGCGCCCTGGTCGGGATCAACAGCGGGCGTATC GCCAACGTCAGCGCCAGCGGGGTCTCGGTCGTCGGCAGCCGACTGCGCTCCAACGCACTGGGCGGCCTGGTCGGGCGCAATATCAACGGGCAGATCACGA ACGCATCCGTCAGCGGCGGCGTCACCGCTTATGCGGCGAGCACGGCGGTCGGCGGTCTGGTGGGGGAGAACTTCACCACCGCCTGGGGGCCGGAGGCGGT CATCGAGAACGCCCACAGCAACGTCCATGTGGCTGCACAGTCCACCGAGCGCAACAGCCTGGGCGGCGTCGGCGGCCTGGTCGGACTGAATGCGAAGGCC ACGATCAGGGCGTCCGGCAGCCAGGGGAAGGTCGAGACCTACCGGCCCGGCCTGAACGTCGGCGGCCTGGTCGGCTACAACATGTTCGGCCACGTCTCCG ATAGTAGCGCCAGCGGCCAGGTGGAGGCCGGCGGCGCGGGGTATACCGGCGGGCTGGTCGGCCTGAGTTCCGGCGGCGAGATATTCCGCTCGCAGGCGAG CGGGTCGGTGTACAGCAAGGGCGGCCTGGCGACCGGAGGGTTGATCGGCAAGGCAGAAGGCAACGGCATGCTCGGAAACCTGAAAGCCAGCGGCAGCGTC ATGGACCAGGGGGGCGCGGATCTGGGCGGGCTGGTCGGCAACAACAGCCAGGGTGCCATCGAGACCGCCGAGGCGACGGGCAAGGTCAGCGGCGGCAGCA ACAGTCGCGTCGGCGGGCTGATTGGACACAACCTCGGCGGTTCCGTCGCCCATGCGATCTCGCGCGGCGACGTGAGCGGCGGCTTCAACAGCCTGGTGGG CGGGCTCGTCGGCCACAACGGCGGCGAACTGTTCAACGTGGATGCCAGCGGCAGGGTCAGCGCCGCTGCGAGTGCGTCGGTTGGCGGCCTGGTCGGCAGC AACGCCGGTTCGATCCTGTCGGCGCGCAGCAGCAGTACCGTCAGCGGCGGCGGGCGCAGCCGCATCGGCGGCCTGGTCGGCGAGAACCAGATCCAGGGAC GCATCGTTTCGTCCATGTCGGAAGGCACCGTCAGTGGCGACTACTACGTCTCCATGGGCGGGCTGGCCGGCGTCAACCTGGGATCGATCAAGTACTCCGG CGTTAGCGGCAAGATCGACTTCAAGCCTCAGTCCCATTACGGCCAGATCTACGGTGCGCAGGTCGGCGAGAACCGTGGGGTCCTGGGCGGCAACTACGTG ATCGGCGAGGCGGCGCTCCTGCCGCCTGCCGGTATCGACTACGGCAACATCTGGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCCGGCAGGGGAGGTCCCAGGCGGACCTCCCCTGCCGGCCGGGGCCGCTTTCGCCTGGAGTGCGGCCCTCTTCCGCAGGCGCAATCTTGGAGAGTTCCA TGAGCATGAGGTTATTTCCTGGCCGCGTTTCCCTGCGCCGCCGGCCTGGCGCGCAGGCTCGGCAGGCGCTCGTTCTCGGTCTCTGCTGCCTGACCGGCGG CCAGGCCTGGGCCCTGAACGACATCGCCCTGAACTGCTCGTTCGGCAATGGCCAGGGCATGCCCTGGCGTGTGGTGAACGAGCTGACCAGCGGCACGGCG AAAGGCACGGTGCTGTTCGCCAGGCCGGTGAGCCTGTTCCTGAGCTACAAGCCCCAGGCTTCCCAGGAGGCGCATGAGCTGGTCCTCGGGGGGAACTGGT CCGGGGTGGGCTATCCGGGGCCCTACGGCACGGTGGCGTCCGACGTCAAAGGCATCGGCTATCGGATCTCGGTGGATGCCCAGGACGGCGTCAAGCGGGT
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| Amino Acid Sequence |
>adhesive protein CupB5
MNKCYALVWNVSQGCWNVVSEGSRRRGKPAGAKAAIASALALLGATALAPAYALPSGGTVVGGSANGEIHLSGGNSLSVNQKVDKLIANWDSFSVAAGER VIFNQPSSSSIALNRVIGTKASDIQGRIDANGQVFLVNPNGVLFGRGAQVNVGGLVASTLDITDAEFNGNSSRYRFTGPSTNGVLNHGGAITAAEGGSIA LLGAQVDNRGTVLAQMGGVGLGAGSDLTLNFDGNKLLDIRVDAGVANALASNGGLLKADGGRVLMAARTANALLNTVVNSQGAIEARSLRGKNGRIVLDG GPDGKVMVGGALSANALNGPGHGGTVEVRGQAVEVALGTQVNTLASNGLNGTWKIAADKIDVRPSAVSDGVTVHADTLSRNLASTNIELVSTKGDLDLDG SVSWASGNRLGLGSAADLTLNGRLNASGAKAGLELKAEGAIDINDKIVLGGAGSALAMDAGEGHRVNGTASVSLAGANATYVSGGYYYTVVQNLAQLQAI NKNLDGLYVLGGNILGGSYYCTALQSIGGPAGVFSGTLDGLGNSIGNLSISNTGPNVGLFARSSGTLSNLKLNNLRVSDNTYGSGPSSLGALVGINSGRI ANVSASGVSVVGSRLRSNALGGLVGRNINGQITNASVSGGVTAYAASTAVGGLVGENFTTAWGPEAVIENAHSNVHVAAQSTERNSLGGVGGLVGLNAKA TIRASGSQGKVETYRPGLNVGGLVGYNMFGHVSDSSASGQVEAGGAGYTGGLVGLSSGGEIFRSQASGSVYSKGGLATGGLIGKAEGNGMLGNLKASGSV MDQGGADLGGLVGNNSQGAIETAEATGKVSGGSNSRVGGLIGHNLGGSVAHAISRGDVSGGFNSLVGGLVGHNGGELFNVDASGRVSAAASASVGGLVGS NAGSILSARSSSTVSGGGRSRIGGLVGENQIQGRIVSSMSEGTVSGDYYVSMGGLAGVNLGSIKYSGVSGKIDFKPQSHYGQIYGAQVGENRGVLGGNYV IGEAALLPPAGIDYGNIW
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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