Pseudomonas aeruginosa 2192, PA2G_01736

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02381
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02381
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002599
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other 2192 genes in this class
Adaptation, Protection Other 2192 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:2.40.50.140:FF:000006 Cold shock protein CspC - - 1 67 1.9E-29
NCBIfam TIGR02381 JCVI: cold shock domain-containing protein CspD IPR012751 CspD, cold shock 1 67 2.2E-37
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 1 86 2.9E-26
PIRSF PIRSF002599 Cold_shock_A IPR012156 Cold shock, CspA 1 85 1.6E-22
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 1 65 2.4E-22
Pfam PF00313 'Cold-shock' DNA-binding domain IPR002059 Cold-shock protein, DNA-binding 3 65 5.0E-27
SMART SM00357 csp_8 IPR011129 Cold shock domain 3 67 3.9E-23
PANTHER PTHR11544 COLD SHOCK DOMAIN CONTAINING PROTEINS - - 3 69 1.7E-18
PRINTS PR00050 Cold shock protein signature IPR002059 Cold-shock protein, DNA-binding 4 19 1.6E-15
CDD cd04458 CSP_CDS IPR002059 Cold-shock protein, DNA-binding 4 64 6.16489E-30
PRINTS PR00050 Cold shock protein signature IPR002059 Cold-shock protein, DNA-binding 25 34 1.6E-15
PRINTS PR00050 Cold shock protein signature IPR002059 Cold-shock protein, DNA-binding 40 58 1.6E-15
MobiDBLite mobidb-lite consensus disorder prediction - - 70 90 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.