Pseudomonas aeruginosa AZPAE14840, NR58_RS18665

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas aeruginosa strain AZPAE14840 AZPAE14840_contig_17, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGAACCGCGCTTGAGCGACGTGCGTGTCGTTTCCCTGCCACGCGACAACGACCAGCTCCGCCTGGCCTTCAGCATCGAAGGGTTGCTGGAGGTGGAAGGT TTCAAGCGCCAGGTGAGTTTTTCCGCATGCCTGGATGGCAGCGGCCAGGTGAAGGTCAGCTAAGGAGGTTTCGATGTCCGGCAAACCCGCAGCCCGCGTT TCCGATCCAACCGCTTGTCCGCTCCCCGGGCACGGCAGCAATCCCATCGTCGTCGGTTCCGCCGACGTGTTCTTCGACGGCCTCGCGGCGGCCCGCCAGG GTGACGCCTCGGCCTGGTGCTGTACCGCTTCGATGCCTGGTTCGTCCATGAGGTCTTCTGAGATGGGCGCGAATCGGGTCGATTACGGAAAGACAACGGA CACCGTGGGTTTCCGATCTTCAGGCCAGAAATGTCATTGCGGTTTTGGCGGCAGCGGTCAGACGACTGCCATCAGTGAAACGATATCCAGCAGGTAAGCC
DNA Sequence for Gene
>NR58_RS18665
GTGTCCTTCAATCATTACTACCAGAGCGAACTCACCGCACTGCGCCAGCTGGGGCGCCGTTTCGCCGAGCGTAGCCCGGCCCTGGCCCCGTTTCTCGGGC AGGTCGGACGCGATCCGGATGTCGAGCGCCTGCTCGAGGGCTTTGCCTTCCTGACCGGGCGGTTGCGGCAGAAGCTGGACGACGAGTTGCCGGAACTCAG TCACTCGATGATGCACCTGCTGTGGCCGAACTATATGCGCCCGCTGCCGGCTTTCAGCATTCTCCAGTTCGACCCCCTGACCCGCCCGGGCGGGGCGCTG CGCGTGGAGCGCGATACGCCGGTCGAGAGCCGGCCGGTGGGCGAGGTCGCCTGTCGCTTCCGTACCTGCTACGTCACCGAGGTCCTGCCGCTGGTGCTGG AAGCGCTCAACTATTCGGTGACCGGCGAGGGTGCGCTGCTCGGCCTGCGCCTGGCGATGAACTGCGACGGGCATCTCGGCGAGCTGGGCCTGAGTCGGCT GCGCCTGCACCTGGCCGGCGAGCGCTACATCAGCCAGATGCTCTATCTGTGCCTGCTGCGCAACCTGGAGAGCATCCAACTGATTCCGCTGGACGCCCAT GGGCGGCCGCTGGATGGCGTGGCCGGCAAGCCGATGTCGTTCCGCCTGACGGGCGAGCGGGTGCAGCCGGTGGGTTTCGCCGAAGACGAGGCGTTGATTC CCTATCCGCTGAATACCTTCCGTGGCTATCGCTACCTGCAGGAGTACTTCGCGTTCCAGGACAAGTTCCTGTTCGTCGACGTGGATGGCCTTGACCTGCT CGGCGCGCTGCCCGAGGAAACCCTCAAGCAGGTCCGCGGCCTCGAGTTGCGCTTCGATATCCGCAAGAGCGGCATCCAGCGCCTGCACCCGACACTGGAG AACGTCAAGCTGTACTGTACGCCGGTGGCCAACCTGTTCCGCCACGATGCGCTGCCGATCCGCCTCGACGGCAAGCAGGACGAGTACCTGCTGATGCCGG CCGAATACAGCCTGGAGGACTGCGGGGTGTTCTCGGTAGAGGGCGTCACCGGCTGGCGGCCGGGCGGGCTCGGCTACCAGGCCTATGTGCCGTTCGAGTC CTTCGAGCACGATCCCAGCTTCGACGTCCCGGAAGCACGGCCCCACTACAGCGTCCGGCAACGGACCTCGTTGCTGCACGATGGCCTGGACACCTACCTG AGCTTCGGCATCCGCCATCCCGAGCAGATCGAGACGCTGTCGGTGGAACTGACCTGCACCAACCAGAACCTGCCCCAACGGCTGCGCCTGGGCGATATCT GCGTCGCTTGCGAAGGTACGCCGGAGTTCCTCGGTTTCCGCAATATCACCCCGGCGACGCCGAGCTACGCGCCGCCGCTGAACCGCGATTTCCTCTGGAA ACTGATCAGCAACATGTCGCTCAACTACCTGTCGCTGGCCAACGTCGACGCACTCAAGGTGATCCTCGAAACCTACGACCTGCCGCGCTACTACGACCAG CATGCGGCGAAGGTCAGCAAGCGCCTGCTGGGCGGGCTCAAGGCGGTCCGCCACGAGCATGTCGACCGCCTGCATCGGGGCCTGCCGCTGCGCGGCTTGC GTACCGAGCTGACGATCGATCCGGAAGGCTACATCGGCGAGGGCGACCTGTTCGTGTTCGCTTCGGTTCTGAACGAATTTTTCGCGCTTTACGCCAGCAT CAACTCCTACCACGAGTTGCGGGTGAGGAGCACACAGGGAGACGTGTACCAATGGAAACCGCGCATGGGTTTGCAGCCCCTGCTGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCGCGCTGGCCCGGGGCATTCGCGAGTACTCGCTGTTCCAGGCGGTCCTGCTGGTCATGGATCGCCTGCGCCAGGAACATCCCGGCCTGGGAGACGAGGC GCTCTACGATCAGTTGGAATTCCAGGCCAATCCTAGCCTCGGCTTCCCGGGCAGCGATGTCGATCGGGTGGAGTTCTTCGAAGAGCGCGGCATGCTGCGG GCGCGGCTGCGTTTCAACCTGATCGGCTTGTTCGGTGCCAGTTCGCCGTTGCCGGCGTTCTACAGCGAGCAGGCTCTGGGCGACAGCGAGGAGGGCAATC CTACGCGGAACTTCCTCGATCTCTTCCATCACCGCCTGCATCGGCTGCTGTTGCCGATCTGGCGCAAGTACCGCTACCAGGTGAGCTTCCAGAGCGGCGC GAGCGATGCGTTTTCCGCCCAATTGTTCGCCCTCGTCGGATTGGGCGGGGAAGAGATCCGCAAGGCCAGGGAACTGAACTGGAAACGCCTGCTGCCCTAC
Amino Acid Sequence
>type VI secretion protein
MSFNHYYQSELTALRQLGRRFAERSPALAPFLGQVGRDPDVERLLEGFAFLTGRLRQKLDDELPELSHSMMHLLWPNYMRPLPAFSILQFDPLTRPGGAL RVERDTPVESRPVGEVACRFRTCYVTEVLPLVLEALNYSVTGEGALLGLRLAMNCDGHLGELGLSRLRLHLAGERYISQMLYLCLLRNLESIQLIPLDAH GRPLDGVAGKPMSFRLTGERVQPVGFAEDEALIPYPLNTFRGYRYLQEYFAFQDKFLFVDVDGLDLLGALPEETLKQVRGLELRFDIRKSGIQRLHPTLE NVKLYCTPVANLFRHDALPIRLDGKQDEYLLMPAEYSLEDCGVFSVEGVTGWRPGGLGYQAYVPFESFEHDPSFDVPEARPHYSVRQRTSLLHDGLDTYL SFGIRHPEQIETLSVELTCTNQNLPQRLRLGDICVACEGTPEFLGFRNITPATPSYAPPLNRDFLWKLISNMSLNYLSLANVDALKVILETYDLPRYYDQ HAAKVSKRLLGGLKAVRHEHVDRLHRGLPLRGLRTELTIDPEGYIGEGDLFVFASVLNEFFALYASINSYHELRVRSTQGDVYQWKPRMGLQPLL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site