Pseudomonas protegens Pf-5, PFL_5552 (ssb)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00621
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003697 single-stranded DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00436
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfl03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfl03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfl03030 DNA replication 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 1 155 2.0E-50
PIRSF PIRSF002070 SSB IPR011344 Single-stranded DNA-binding protein 1 159 6.8E-37
PANTHER PTHR10302 SINGLE-STRANDED DNA-BINDING PROTEIN IPR011344 Single-stranded DNA-binding protein 3 110 1.2E-29
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 3 169 6.51E-58
NCBIfam TIGR00621 JCVI: single-stranded DNA-binding protein IPR011344 Single-stranded DNA-binding protein 3 169 1.5E-57
Hamap MF_00984 Single-stranded DNA-binding protein. IPR011344 Single-stranded DNA-binding protein 5 115 36.252975
Pfam PF00436 Single-strand binding protein family IPR000424 Primosome PriB/single-strand DNA-binding 5 107 1.1E-37
CDD cd04496 SSB_OBF IPR000424 Primosome PriB/single-strand DNA-binding 8 103 1.37653E-40
MobiDBLite mobidb-lite consensus disorder prediction - - 110 169 -
MobiDBLite mobidb-lite consensus disorder prediction - - 112 149 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.