Pseudomonas protegens Pf-5, PFL_5452 (mrdA_2)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ACCAGCAATAAGGGACGGCTGTGCGCCTGCGTCTGATCGCTGTCGGTTCACGCATGCCCAAGTGGGTGGAAGAGGGTTGGCACGAGTATGCCAAGCGTCT GCCATCCGAGCTGGCGTTGGAACTGGTGGAAATTCCGCTCAATACCCGGGGCAAGAACGCCGACGTGGCTCGCTTCATCCGTCAGGAGGGCGAGGCCATG CTGGCCAAGGTCGGGCATAACGAGCGCATCGTCACCCTCGAGGTGCATGGCAAACCCTGGAGCACCGAGCAACTGGCGGTGGAACTGGATCGCTGGCGTC TCGATTCGCGCACCGTGAATTTCATGGTCGGCGGCCCGGAAGGGCTGGCGCCGGAGGTCTGTGCGCGGGCGGATCAGCGCTGGTCGCTGTCGCCGCTGAC CTTGCCGCACCCGCTGGTGCGGATTCTCATCGGTGAACAGCTGTATCGCGCCTGGACCGTGCTGTCCGGGCACCCTTACCACAAGTAGCCCGCGCCCCTC
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| DNA Sequence for Gene |
>PFL_5452
|mrdA_2
ATGTCCCAGCCGATCCGCATCAAGGACCACGAAAAAGACGCCCGTCTGGTGCGTGGCCGTGTCGTGTTCGGCGCCATCATGGTGGTTTGCCTGATCGGTG TGCTGATTGCCCGGCTGTATTACCTGCAGGTGATCCAGTACGACTATCACTCCACCCTTTCGGAGAACAACCGGGTCCACGTGCAGCCGATTCCACCGAC TCGCGGGTTGATTTTCGACCGCAATGGCGTGGTGGTGGCGGACAACCGGCCCAGCTTCAGCCTGAGCATGACCCGCGAGCGCTCTGGCGACTGGCAGCAG GTGCTCGACGTGATCGTCGAGGTGCTGGAGCTGACTCCGGAAGACCGGGTGCTGTTTGAAAAGCGCATGAAGCAGGGGCGTCGGCCTTTCGAGCCGGTGC CGATCCTGTTCGAGCTGACGGAAGAGCAGATCGCCCGGATCGCGGTGAACCAGTTCCGCCTGCCCGGTGTGGAAGTGGTGGCCCAGCTGGTCCGGCATTA CCCCCAGGGCGCGCATTTTGCGCACTCCGTGGGCTATATGGGGCGGATCAACGAGAAAGAGCTCAAGTCCCTCGATCCGGTGAACTACAGTGGCACCCAC CATATCGGCAAGACCGGCATCGAGCGCTTCTACGAGCCTGAGCTGCACGGCCAGGTGGGTTACGAAGAGGTCGAGACCAATGCCCGTGGCCGGGTGCTGC GGGTGCTCAAGCGCACCGACCCGATTCCCGGCAAGGACATTGTCCTGAGCCTGGACATCAAGTTGCAGGAAGCCGCGGAACTGGCCCTGGGCGGGCGCCG TGGCGCGGTGGTAGCCCTGGATCCGAGTACCGGTGAAGTGCTGGCGATGGTCAGCCAGCCGAGCTTCGACCCCAACCTGTTCGTCACCGGCATCAGCTTC AAGGCCTATGCCGAGCTGCGCGATTCCATCGACCGGCCGCTGTTCAACCGGGTGCTGCGGGGCCTCTATCCGCCGGGTTCGACCATCAAGCCGGCGGTGG CCATTGCCGGGCTGGATGCCGGCGTGGTCACGGCTTCGACCCGGGTCTACGACCCGGGCTACTACCAGTTGCCCAACTACGACCACAAGTACCGCAACTG GAACCGTACCGGTGACGGTTATGTCGACCTGGATACCGCGATCATGCGGTCCAACGACACCTATTTCTACGACCTGGCCCACAAGCTGGGGATCGACCGG CTGTCCGCCTACATGAGCAAGTTCGGTATCGGCCAGAAGGTCTCTTTGGACATGTTCGAGGAGTCGCCGGGCTTGATGCCGACCCGCGAATGGAAGCGCG CCACCCGGCGCCAGGCCTGGTTCCCGGGGGAGACCCTGATTCTCGGGATCGGCCAGGGCTATATGCAGTCCACGCCGTTGCAACTGGCCCAGGCCACCGC CCTGGTCGCCAGCAAGGGCAAGTGGAACCGGCCGCACCTGGCCAAAAGCATCGAGGGCGAGAAGCCGGTGGATCACAACCCGATGCCGGACATTGTCCTG CGTGACCCCTCGGACTGGACGAAGGTCAACCATGGCATGCAGCAGGTGATGCACGGTGCCCGGGGCACCGCGCGCAAGGCTGCGGCCGGTTCGCCGTACC GGATTGCCGGCAAGAGTGGTACCGCCCAGGTGGTGGCGATCAAGCAGGGCGAGAAGTACGACCGCTCCAAGGTCCAGGAACGGCATCGTGACCACGCCTT GTTCGTCGGCTTCGCTCCGGCGGAAAACCCCAAGATCGTGGTCTCGGTCATGGTCGAGAACGGTGAGTCGGGCTCCGGCGTCGCGGCACCGGTAGTGCGT CAGGTGATGGATGCCTGGCTTCTCGGCCAGGACGGCCAGCTCAAGCCCGAGTTCGCCAGCCCTATCAGCGCGGAGGCTACGGCCCGTGAAGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTTTGACCGTATCCTCTCCAGTGAGGATGTGATGCGTCGTCGCGCGACGCTGTTGCAGCGCCTGCATATCGATGGCCCGCTGCTGGTGCTGCTGCTGACC CTGGCTGCCGGTAGCCTGTTCGTGCTGTATTCCGCCAGCGGCAAGAGTTGGGACCTGCTGGCCAAACAGGCCACTTCATTCGGTATCGGCCTGGTGTCGA TGATCGTCATCGCCCAGTTCGAGCCGCGCTTCATGGCCCGCTGGGTGCCGCTGGGCTACGTGTTCGGCGTGGTGCTGCTGGTGGTGGTAGATGTCATGGG CCACAACGCCATGGGAGCGACCCGCTGGATCAACATCCCCGGGGTGATCCGCTTCCAGCCGTCGGAGTTCATGAAGATCATCATGCCGGCGACCATCGCC TGGTACCTGTCCAAGCGCACCCTGCCACCCCATCTCAAGCATGTGGGGATCAGCCTGGTGCTGATTGGCATTCCGTTCATCCTGATCGTGCGCCAGCCTG
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| Amino Acid Sequence |
>penicillin-binding protein 2
MSQPIRIKDHEKDARLVRGRVVFGAIMVVCLIGVLIARLYYLQVIQYDYHSTLSENNRVHVQPIPPTRGLIFDRNGVVVADNRPSFSLSMTRERSGDWQQ VLDVIVEVLELTPEDRVLFEKRMKQGRRPFEPVPILFELTEEQIARIAVNQFRLPGVEVVAQLVRHYPQGAHFAHSVGYMGRINEKELKSLDPVNYSGTH HIGKTGIERFYEPELHGQVGYEEVETNARGRVLRVLKRTDPIPGKDIVLSLDIKLQEAAELALGGRRGAVVALDPSTGEVLAMVSQPSFDPNLFVTGISF KAYAELRDSIDRPLFNRVLRGLYPPGSTIKPAVAIAGLDAGVVTASTRVYDPGYYQLPNYDHKYRNWNRTGDGYVDLDTAIMRSNDTYFYDLAHKLGIDR LSAYMSKFGIGQKVSLDMFEESPGLMPTREWKRATRRQAWFPGETLILGIGQGYMQSTPLQLAQATALVASKGKWNRPHLAKSIEGEKPVDHNPMPDIVL RDPSDWTKVNHGMQQVMHGARGTARKAAAGSPYRIAGKSGTAQVVAIKQGEKYDRSKVQERHRDHALFVGFAPAENPKIVVSVMVENGESGSGVAAPVVR QVMDAWLLGQDGQLKPEFASPISAEATAREE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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