Pseudomonas protegens Pf-5, PFL_3182
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGATTTTGCCCGCCAGCCGCACCTGAGCCCGCGCCAGCGCAAGGAACGCATCGACCAGGCGATTGCCGCAGTGGGCCTGGAACACGCCCGCCAGCGCTAT CCGGCCCAACTGTCCGGCGGCATGGCCCAGCGCACCGCACTGGCCCGCTGCCTGGCGCGCCAGCCCCAGGTGCTGCTGCTGGATGAACCCTTCGGCGCGC TGGACGAGGTGACCCGCGCCGACATGCAGCAACTGCTGCTCAAGGTGATCGGCCAGCACCGCACCGCGGCGCTGCTGATCACCCACGACATCGACGAAGC CCTGCTGCTGTCCGATCGGGTACTGCTACTGGGTAACAGCCCGGCGCGCACCCTCGGCCAGTGGCACATCGAGCTGCCGGCGCCGCGCGCCGAGCGGATC GAGGAACTGGGCGCGCTGCGCATCGAGATTCTCAAGACCCTTCGGCGGGCGAGCCGCAACCCCCACACTTCCCCTTTGCCTGCACCGTCGGAGATTGACC
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| DNA Sequence for Gene |
>PFL_3182
ATGTGCCTGGACGACTTCACTCATACCCGTCGTGACTTTCTCAAGCTCAGTGCGCTGCTGACTGCCGGCGGCGCCTTGCCGCTGCTCAACAGCCTGCAGG CCCGCGCCGCCCAGGAACCGGACGCGCCGGTGCGCATCGGCTACCTGCCGATCACCGACGCCACGCCCTTGCTGGTGGCCCACAACAACGGCCTGTTCGA GGCCGAGGGCATCAAGGCCGAGCGCCCGGTGCTGCTGCGCAGTTGGGCCCAGGTGATCGAGGCGTTCATTTCCGGGCAGGTCAACGTGATTCACCTGCTG TCGCCGATGACCGTCTGGGCCCGCTACGGCAGCCGGGTGCCGGCCAAGGTGGTGGCCTGGAACCACGTCGGCGGTTCCGGCCTGACCGTGGCCCCGGGCA TTACCGAGGTCAAGCAACTGGCGGGGCAGTCGGTGGCGATCCCGTTCTGGTATTCGATCCATAACGTGGTGGTGCAGCAACTGTTTCGCGACAACGGCCT GGTGCCGGTGAGCAAGGCCGCCGGCAGTGCCCTGGGGGCCAACGAGGTCAACCTGGTGGTGCTGCCGCCTTCGGACATGCCGCCAGCCCTGGCCAGCAAG CGGATTGCCGGCTACATCGTCGCCGAGCCGTTCAATGCCCTGGCCGAGGAACTCAAGGTGGGCCGGGTGCAGCGCTTTACCGGGGATGTGTGGCGCAACC ACGCCTGCTGCGTGGTGTTCATGCACGAGCATGACCTGGACAACCGTCCCGAATGGTCGCAGAAGGTGGTCAACGCCATCGTCAAGGCCCAGCTGTGGAC CCGCGACCACCGCGCCGAGGCCGCGCAACTGCTGTCCAAGGATGGCGCCAACCGCTACACGCCCCATGCGCCCCAGGTGCTCAACCGGGTGCTGGCGCCG GCGGCGGCCGACCGCGAGGCCTACCTGGCCAGCGGCGCGATCCAGCACAGCCACTGGGACGAGCAGCGCATCGACTTCCAGCCGTATCCGTTCCCCAGCT ACACCGAAGAGTTGGTCAAGCGTCTCAAGGACACCCTGATCGAGGGCGACAAGGGCTTTCTGGCCGGCCTTGACCCGGCACACACCGCCAAGGACCTGGT GGACGATCGCTTCGTGCGCAACGCCATCGCCTCGGTGGGCGGGCTGAAGGCCTTCGGCCTGGCGGACAGCTTCGAGCGCAGCGAGGAGTTCGGTCTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGGCAAGCAACCTTCTTCCCTGAGCCATTGGCTCCTGGGGCTTGCCGGGCTGTCGAGCCTGCTGCTGGGCTGGTGGCTGGGGGTGCACCTGCTGGGCGA TGGCAACGGCCTGGCTGCGCGTTTCTCCCCCGAGGCGACCTTCGCCAGCCTGCTGGAACTGCTGGGGCGTGGCGAGCTGTACGAGCATGTGCTGGTGAGC CTCAAGCGGATCCTGGTGGGTTTGCTCCTGGCCTTGCTGATCGGCGTGCCCCTGGGCCTGCTGGTGGGCAGCTACCGGCACCTGGAGGCAGCCACCACCC CGGCGTTCCAGTTTCTGCGGATGATCTCGCCGCTGTCCTGGATGCCGGTGGTGGTGATGCTGATGGGGGTAGGGGACCAGCCGATCTACTTCCTCCTGGC GTTCGCCGCGCTGTGGCCGATCCTGCTCAACACCGCGGCCGGCGTGCGCCAGCTGGACCCGCGCTGGCTGCAACTGAGCCGCAGCCTCAGCGCCACCCGC
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| Amino Acid Sequence |
>NitT family nitrate/nitrite/cyanate ABC transporter periplasmic nitrate/nitrite/cyanate-binding protein
MCLDDFTHTRRDFLKLSALLTAGGALPLLNSLQARAAQEPDAPVRIGYLPITDATPLLVAHNNGLFEAEGIKAERPVLLRSWAQVIEAFISGQVNVIHLL SPMTVWARYGSRVPAKVVAWNHVGGSGLTVAPGITEVKQLAGQSVAIPFWYSIHNVVVQQLFRDNGLVPVSKAAGSALGANEVNLVVLPPSDMPPALASK RIAGYIVAEPFNALAEELKVGRVQRFTGDVWRNHACCVVFMHEHDLDNRPEWSQKVVNAIVKAQLWTRDHRAEAAQLLSKDGANRYTPHAPQVLNRVLAP AAADREAYLASGAIQHSHWDEQRIDFQPYPFPSYTEELVKRLKDTLIEGDKGFLAGLDPAHTAKDLVDDRFVRNAIASVGGLKAFGLADSFERSEEFGL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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