Pseudomonas protegens Pf-5, PFL_2216 (pedE)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCGCAGTTCTGGTTGTAGGCCGAAGCGCCGATTTCCACCGCCTTGTCGTGCTCGGGCGAGGTGCGGTACGGGTTGACCGCGGCCCAGCCGTCACCATC GACGCTCACCCCGGCATCCTTGATCGGCGTCAGGCCCTTGGTCTCCACCGCCTGGGGCACCACGTTGCCATGGGCCCATACGGCACCGGTGGCCAAGGCA CCGGTCAGCAGCCCTACCGCGAGCAAGGCGTTGCGTTTTGTTGTCATTGTTATGCCCTCAAGATTGCACGCAAGACCTCGCTACAGAGGCCATGGCGCCA TCTTAGAAACAGCCGGCGGGCGGCCGTATGCTGCTTTGGTGGCCGCGCCCTACTCCCTTGGTAGTAGGGCTTGTGGCGCGGGCCTAAATCAGGTGCCGCC CGGGAACTATTCCCGGCAAGGGCGGGACTTTTTCCGTATCTCAAAGCGCCTCGCGCGGCAGACCCTAGTCAGGCCAAAACCTCCACTGGGAACCGCAACC
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| DNA Sequence for Gene |
>PFL_2216
|pedE
ATGACAATAAGATCGCTACCCGCCCTCTCCCCCCTGAGCCTTGCCGTCCAGGCCCTGCTGCTGGCCGGCAGCCTGTCCCTGGGCGCGGCGGCCACAGCGG CCACCGCCCCGGCGGCACCTGCCGGCAAGAACGTGACCTGGGAAGACATCGCCAACGACCACCTGACCACCAAGGACGTGCTGCAGTACGGCATGGGCAC CAACGCCCAGCGCTGGAGCCCCCTGGCCCAGGTCAACGACAAGAACGTGTTCAAGCTGACCCCGGCCTGGTCCTACTCCTTCGGCGACGAGAAGCAGCGC GGCCAGGAATCCCAGGCCATCGTCAGCGACGGCGTGGTCTACGTCACCGGCTCCTACTCCCGGGTGTTCGCCCTGGACGCCAAGACCGGCAAGCGCCTGT GGACCTACAACCACCGCCTGCCGGACAACATTCGCCCGTGCTGCGACGTGGTCAACCGCGGCGCGGCGATCTACGGCGACAAGATCTACTTCGGCACCCT CGATGCCCGGGTCATCGCCCTGGACAAGAACACCGGCAAGGTGGTGTGGAACAAGAAGTTCGGCGACCACAGCGCCGGCTACACCATGACCGGCGCCCCG GTGCTGATCAAGGACAAGACCAGCGGCAAGGTGCTGCTGATCCACGGCAGCTCGGGCGATGAATTCGGCGTGGTCGGCCAGCTGTTCGCCCGCGACCCGG AGACCGGCGAAGAGGTGTGGATGCGGCCCTTCGTCGAAGGCCACATGGGCCGCCTGAACGGCAAGGACAGCACCCCCACCGGCGACGTCAAGGCGCCGTC CTGGCCCGACGACAAGACCACCGAAACCGGCAAGGTCGAAGCCTGGAGCCACGGCGGCGGCGCCCCTTGGCAGAGCGCCAGCTTCGATGCCGAAACCAAC ACCATCATCGTCGGCGCCGGCAACCCCGGGCCATGGAACACCTGGGCGCGCACCGCCAAGGACGGCAACCCCCACGACTACGACAGCCTGTACACCTCGG GCCAGGTCGGCGTCGACCCGAGCACCGGCGAAGTGAAATGGTTCTACCAGCACACGCCGAACGACGCCTGGGACTTCTCCGGCAACAACGAACTGGTGCT GTTCGACTACAAGGGCAAGGACGGCAAGGTGGTCAAGGCCACCGGCCACGCCGACCGCAACGGCTTCTTCTACGTGGTGGACCGCAACAACGGCAAATTG CAGAACGCCTTCCCCTTCGTCGACAACATCACCTGGGCCAGCCACATCGACCTCAAGACCGGGCGCCCGGTGGAAAACGAAGGCCAGCGTCCGGCCAAGC CGCTGCCGGGTGAAACCAAGGGCAAGCCGGTGGAAGTCTCGCCGCCGTTCCTGGGTGGCAAGAACTGGAACCCCATGGCCTACAGCCAGGACACCGGGCT GTTCTACATCCCCGGCAACCAGTGGAAGGAGGAGTACTGGACCGAGGAAGTGAACTACAAGAAAGGCTCGGCCTACCTGGGCATGGGTTTCCGCATCAAG CGCATGTACGACGACCACGTCGGCACCCTGCGCGCCATGGACCCGACCACCGGCAAGCTGGTCTGGGAGCACAAGGAACACCTGCCGCTGTGGGCCGGCG TCCTGGCGACCAAGGGCAACCTGGTGTTCACCGGCACCGGCGACGGCTTCTTCAAGGCCTTCGACGCCAAGACCGGCAAGGAGCTGTGGAAATTCCAGAC CGGCAGCGGCATCGTTTCGCCGCCCATCACCTGGGAACAGGATGGCGAGCAGTACATCGGTGTGACCGTGGGCTACGGCGGCGCGGTGCCGCTGTGGGGC GGCGACATGGCCGAACTGACCAAGCCGGTGGCCCAAGGCGGCTCGTTCTGGGTGTTCAAGATCCCGAGCTGGGATAACAAGACCGCCCAGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCATCCCCGCCTTGTCTGTGGCGAGGGAGCCCGCTTCCTCGCCACACCCGCCTTCACTCCCGCCTGGAGAACCGCACCATGAACTACCTGCCCCTGGCCC TGCTGCTGAGTCTCTCCCCCGCCTTGGCCATGAATGTCGACGACGACGGCAACGACGTCCCGCTGACGATCAACGGCTGCCTGATCGCCGAATCCAGCCA ATGCCCCGGCGCCAACCTGCGTGGCGCTAACCTCGCCAACCAGGACCTGCGCAAGATGAACCTGGCCGGCGCCGACCTCTCCGGCGCCGACCTGCGCCAC GCCCAACTGGACCTGGCCAACCTGGAAAAGGCCCGCCTGCAAGGCGCCAACCTGACCCGCGCCAGCCTGCAACAGAGCAACCTGCGGCTGGCGGACTTCA CCGACGCCAAGCTGATGGCGATCCAGGGCTGGGGCCTGTTTGCCCAGGGCGCGCAATTCGAAAAAGCCGACCTCAGCGCGGCCTACCTGCAATTTGCCCG
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| Amino Acid Sequence |
>quinoprotein ethanol dehydrogenase PedE
MTIRSLPALSPLSLAVQALLLAGSLSLGAAATAATAPAAPAGKNVTWEDIANDHLTTKDVLQYGMGTNAQRWSPLAQVNDKNVFKLTPAWSYSFGDEKQR GQESQAIVSDGVVYVTGSYSRVFALDAKTGKRLWTYNHRLPDNIRPCCDVVNRGAAIYGDKIYFGTLDARVIALDKNTGKVVWNKKFGDHSAGYTMTGAP VLIKDKTSGKVLLIHGSSGDEFGVVGQLFARDPETGEEVWMRPFVEGHMGRLNGKDSTPTGDVKAPSWPDDKTTETGKVEAWSHGGGAPWQSASFDAETN TIIVGAGNPGPWNTWARTAKDGNPHDYDSLYTSGQVGVDPSTGEVKWFYQHTPNDAWDFSGNNELVLFDYKGKDGKVVKATGHADRNGFFYVVDRNNGKL QNAFPFVDNITWASHIDLKTGRPVENEGQRPAKPLPGETKGKPVEVSPPFLGGKNWNPMAYSQDTGLFYIPGNQWKEEYWTEEVNYKKGSAYLGMGFRIK RMYDDHVGTLRAMDPTTGKLVWEHKEHLPLWAGVLATKGNLVFTGTGDGFFKAFDAKTGKELWKFQTGSGIVSPPITWEQDGEQYIGVTVGYGGAVPLWG GDMAELTKPVAQGGSFWVFKIPSWDNKTAQR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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