Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
AAGACGAGTCACGGCAAGCTGCGGGTTCCCGACTTGCAGCTTGCCGCTCGTGGTTCAACCTCCCGCTCCTTTGCGACCAAGTGTCGCACCCTCTCCCGCA GCGCGTTTGCACTCATCTGATTCAGGTCTAAGCTTGCCCCGATGGGGACTGGCACGGGCTGGTCACAGGCCAACGGTATCCGTGACGTTCGAAGCTTCTG CTCGATGACAGGCCGCAAAGGCTGGTTTATACCGGCTGTCGACTCTCTTACCGCCTGTCAGCTGATCCATCAGCTTCCACACACCCGGTTACAACCGACC TGACACCCCCCGTTTCCTGTCCATGGCGACAGCTTGTCCGAGGGCAATTTTTTGTCCCTACTCGGCATAGGGAAAGGCCGCAGAATCAGGCATGGAACGC ATTGACCCAGGTCATAGCGCGTTGCAATGACCCCCTGCTTTCTCCATACTTGCGACCGATTTTTATCCCTAATAAAACACCCAAACCGTGGAACCTTAGA
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DNA Sequence for Gene |
>PFL_1921
|ccoN_1
ATGAGCACAGCAATCAGTCCGACTGCTTATAACTATAAGGTAGTCCGCCAGTTCGCCATCATGACGGTGGTCTGGGGGATCCTTGGCATGGGGCTCGGTG TCTTCATCGCCTCACAACTGGTATGGCCGGAGTTGAACTTCGGTCTGCCGTGGACGACGTTTGGACGCCTGCGCCCGCTGCACACCAACCTGGTGATCTT CGCCTTCGGTGGATGTGCATTGTTTGCCACCTCTTACTATGTCGTGCAGCGAACCTGCCAGACGCGACTGATTTCCGACAGCCTCGCGGCCTTCACCTTC TGGGGTTGGCAAGCGGTGATCGTCGGCGCGATCGTGACCCTGCCACTGGGTTACACCACCACCAAGGAATACGCCGAACTGGAATGGCCCCTGGCTATCC TGCTGGCGATCGTCTGGGTCACCTACGGCCTGGTATTCTTCGGCACCATCACCAAGCGCAAGACCAAGCACATCTATGTGGGCAACTGGTTCTACGGTGC CTTCATCGTGGTGACCGCGATGCTGCACATCGTCAACCACGCTTCCCTGCCGGTCAGCTTCTTCAAGTCCTACTCGGCCTACGCCGGTGCGACTGATGCG ATGATCCAGTGGTGGTACGGCCACAACGCCGTGGGCTTCTTCCTGACCACCGGCTTCCTGGGGATGATGTACTACTTCGTACCCAAGCAGGCCGAGCGTC CGATCTATTCCTATCGCCTGTCCATCGTGCACTTCTGGGCGCTGATCACCCTGTACATCTGGGCCGGTCCGCACCACCTGCACTACACCGCGCTGCCGGA CTGGGCCCAGTCCCTGGGCATGGCCATGTCGATCATCCTGCTGGCGCCAAGCTGGGGCGGCATGATCAACGGCATGATGACCCTCTCGGGCGCCTGGCAT AAGCTGCGCACCGACCCGATCCTGCGCTTTTTGGTGGTATCCCTGGCGTTCTACGGCATGTCGACCTTCGAAGGTCCGATGATGGCGATCAAGACCGTCA ACTCGCTCTCGCACTACACCGACTGGACCATCGGCCACGTACACGCCGGCGCTCTGGGCTGGGTAGCGATGATCTCCATCGGCGCCCTGTACCACCTGAT CCCGAAAGTCTTCGGTCGTCAGCAGATGCACAGCATCGGCCTGATCAACACCCACTTCTGGCTGGCTACCATCGGTACCGTGCTCTACATCGCCTCGATG TGGGTCAACGGCATCACCCAGGGCCTGATGTGGCGTGCAATCAACGATGACGGCACCCTCACCTACTCCTTCGTCGAAGCGCTGCAAGCCAGCCACCCGG GCTTTATCGTCCGTGCTCTGGGCGGTGCGTTCTTCGCCACCGGCATGCTGATCATGGCGTACAACGTGTTCCGTACCGTTCGCGCCTCGAACCCGGCTGA AGCTGAAGCCGCTGCTCAGATCGCTGTAGTTGGAGCTCACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TGAAGCACGAAGTAGTCGAGAAGAATATTGGCCTGCTGGCCTTCTTCATGGTCATCGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTT CCAGGACGTCACCAACAAGCCGGTGGAAGGCATGAAGCCGCGTACCGCGCTGGAACTGGAAGGCCGCGATGTCTACATCGCCAACGGCTGTGTCGGCTGC CACTCGCAGATGATCCGTCCGTTCCGCGCTGAAACCGAACGCTATGGTCACTACTCGGTGGCTGGTGAGAGCGTCTGGGACCACCCGTTCCTGTGGGGTT CCAAGCGTACCGGCCCGGACCTGGCCCGAGTGGGCGGTCGTTACTCCGATGACTGGCAGCGTGCGCACTTGTACAACCCGCGCAACGTGGTGCCCGAGTC GAAGATGCCGGCTTATCCGTTCCTCGTAGAAAACAAGCTCGACGGCAAAGACACCGCGAAGAAAATGGAAGTCTTGCGCACGCTCGGCGTCCCTTACACC
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Amino Acid Sequence |
>cbb3-type cytochrome c oxidase subunit I
MSTAISPTAYNYKVVRQFAIMTVVWGILGMGLGVFIASQLVWPELNFGLPWTTFGRLRPLHTNLVIFAFGGCALFATSYYVVQRTCQTRLISDSLAAFTF WGWQAVIVGAIVTLPLGYTTTKEYAELEWPLAILLAIVWVTYGLVFFGTITKRKTKHIYVGNWFYGAFIVVTAMLHIVNHASLPVSFFKSYSAYAGATDA MIQWWYGHNAVGFFLTTGFLGMMYYFVPKQAERPIYSYRLSIVHFWALITLYIWAGPHHLHYTALPDWAQSLGMAMSIILLAPSWGGMINGMMTLSGAWH KLRTDPILRFLVVSLAFYGMSTFEGPMMAIKTVNSLSHYTDWTIGHVHAGALGWVAMISIGALYHLIPKVFGRQQMHSIGLINTHFWLATIGTVLYIASM WVNGITQGLMWRAINDDGTLTYSFVEALQASHPGFIVRALGGAFFATGMLIMAYNVFRTVRASNPAEAEAAAQIAVVGAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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