Pseudomonas sp. UW4, PputUW4_01765
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. UW4 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGGCGTGCAGGTCCGCGGCCTCGGCCAACTGCCGCCAGGTGTAACGCAGCTGTTGATGGCGCACCACCAGCGCCTCCCCGTCCGGGAACTGCGCGACCGT GTTGTCGAACGCCTGGCCGATGGTCATCGCCAGCAAGGCTTTGTCCTGGGAACCACGGGTGTAACTGCGTTGCGGGCTTGCACTGGGTTGATCCATGACG ACCCCTATTGTCTTTATTTATGGGCTACCGGCGGCCTCTTGTAGGAGCGAGCTTGCTCGCGATGGAGGTCAACGATGACGCGTACCACCTGAAAAATGCG TCGCCTTCAAGTTCATCGCGAGCAAGCTCGCTCCTACAGGAACTGATCCGCGTTCTATCTTGAACTGGCTCTACTCTCGCTCAAGTTGACGTTAACGTAA AGGGTGATTGACAGCCATTCGCCACAGGCTTACGTTAACGTAAAGGTGAGAACCCGATCACGGCCCTCTCCCGCCCTACAAAAAAGCCAAAAGGTGACCC
|
|
| DNA Sequence for Gene |
>PputUW4_01765
ATGAGCTATCCATCCCTGAACTTTGCCCTCGGTGAAACCATCGACATGCTGCGCGATCAGGTCCAGTCCTTCGTCGCCAAGGAGATCGCCCCGCGCGCCG CTCAGATCGACATCGACAACCTGTTCCCCGCCGACCTGTGGCGCAAATTCGGCGACATGGGTCTGCTGGGCATCACCGTGCCGGAAGAGTACAGCGGCGC TGGCCTGGGTTACCTGGCTCACGTGGTCGCAATGGAAGAAATCAGCCGCGGTTCGGCCTCGGTGGCCCTGTCCTATGGCGCCCACTCCAACCTCTGCGTC AACCAGATCAACCGCAACGGCAACCACGAACAGAAATCCAAATACCTGCCGAAGCTGATCAGCGGCGAGCACATCGGCGCGCTGGCCATGAGTGAGCCGA ATGCCGGTTCCGACGTGGTCTCGATGAAACTGCGCGCCGACAAGCGTGGCGACCACTACGTGCTCAACGGCAGCAAGACCTGGATCACCAACGGTCCGGA CGCCAACACCTACGTGATCTACGCCAAGACCGACCTGGAAAAGGGCCCCCACGGCATCACCGCGTTCATCGTCGAGCGCGACTGGAAAGGTTTCAGCCGC AGCAACAAGTTCGACAAGCTCGGCATGCGCGGTTCGAACACCTGCGAGCTGTTTTTCGATGACGTCGAAGTGCCGGAAGAAAACATCCTCGGCGTACTCA ACGGCGGCGTGAAAGTGCTGATGAGTGGCCTCGACTACGAGCGCGTCGTCCTTTCAGGTGGCCCGACCGGGATCATGCAGGCGTGCATGGACCTGATCGT GCCGTACATCCACGACCGCAAGCAGTTCGGCCAAAGCATCGGCGAATTCCAGCTGATCCAGGGCAAGGTCGCCGACATGTACACCCAGCTCAACGCTAGC CGCGCCTACCTGTACGCCGTGGCCCAGGCTTGCGAGCGCGGCGAAACCACGCGCAAGGACGCCGCCGGCGTGATCCTCTACAGCGCCGAACGCGCCACGC AAATGGCCCTCGACGCGATCCAGATTCTCGGTGGCAACGGCTATATCAATGAATTCCCGGCCGGTCGTCTGTTGCGTGACGCCAAGCTGTACGAAATCGG CGCGGGCACCAGTGAGATCCGTCGCATGCTGATCGGTCGCGAACTGTTCAACGAAACCCGCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACGGAGCTGTCCATGGCTACCCTGCATACCCAGCTCAACCCCCGTTCAGCGGAGTTCGCCACCAACAGCGCGGCGATGCTCAAGCAGGTCGACGCGTTGC ACACCCTGCTCGCCCAAGTGGCGCAAGGTGGCGGCCCGAAGGCTCAGGAACGCCACACCTCGCGGGGCAAACTGCTGCCTCGCGAGCGCATCAACCGCTT GCTCGATCCGGGCTCGCCGTTTCTGGAAATCAGCCAACTGGCGGCGTATGAGGTGTATGGCGAAGACGTCCCCGCTGCGGGCGTGATTGCCGGGATCGGT CGCGTGGAAGGCGTCGAATGCATGATCGTCGCCAACGACGCCACGGTGAAAGGTGGCTCGTATTACCCGCTGACCGTGAAAAAACACCTGCGCGCCCAGA CCATCGCCCAGCAGAACCGTCTGCCGTGCATCTACCTGGTGGATTCGGGCGGCGCCAACCTGCCGCGTCAGGATGAAGTGTTCCCGGACCGCGAGCACTT
|
|
| Amino Acid Sequence |
>isovaleryl-CoA dehydrogenase
MSYPSLNFALGETIDMLRDQVQSFVAKEIAPRAAQIDIDNLFPADLWRKFGDMGLLGITVPEEYSGAGLGYLAHVVAMEEISRGSASVALSYGAHSNLCV NQINRNGNHEQKSKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRADKRGDHYVLNGSKTWITNGPDANTYVIYAKTDLEKGPHGITAFIVERDWKGFSR SNKFDKLGMRGSNTCELFFDDVEVPEENILGVLNGGVKVLMSGLDYERVVLSGGPTGIMQACMDLIVPYIHDRKQFGQSIGEFQLIQGKVADMYTQLNAS RAYLYAVAQACERGETTRKDAAGVILYSAERATQMALDAIQILGGNGYINEFPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|