Pseudomonas sp. UW4, PputUW4_00014 (rsmB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. UW4 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTTAAAGTCACCACGCCGATCAGTGCCGAAGACACTGGCGGCAGCCTTCACGACCGTCTGGCCGAAATGGGTCCACCGGCCGTGGTTCAGGCGATTGCCG GCCTCGCCGCGGGTACGCTGGAAGGCGAAGTGCAGGACGACAGCCTGGCCACCTACGCGCACAAATTGAACAAGGACGAAGCTCGCATCGACTGGAGTCG CCCGGCGGTTGAACTGGAGCGTCTGGTCCGTGCCTTCAACCCATGGCCGATCACTCACAGCACCTTGAATGGCGAAGCCCTGAAAGTGCTGGCCGCGAAC CTGGCCGAAGGTAAAGGTGCACCCGGTGAAATCCTCAGCGCCAGCAAGGACGGCCTGATCGTCGCGTGCGGCGAGCAAGCGTTGTGCCTGACCCGTCTGC AATTGCCCGGCGGCAAGGCGCTGAACTTCAGCGACCTGTTCAACAGCCGCCGTGAGAAATTCGCCACCGGCACTGTCCTCGGTCAAGCGGCGGACGCTCA
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| DNA Sequence for Gene |
>PputUW4_00014
|rsmB
ATGAATCCGCGTCTGGCCGCCGCCAAGGCACTTGCCGCTGTCCTGAACGGAAAAGCCTCGCTCAACAGTTCGCTGCCGACGCAGTTGGACAAGGTCGAGG ACCGTGATCGCGGCTTCACCCAGGACCTGGCGTTCGGCACCGCACGCTGGCAGCCACGTTTGTCGGCGCTGGCGGCCAAGTTGCTGCAAAAGCCGTTCAA GGCTGCCGATGCCGATGTTGAGGCGCTGCTGTTGGTCGGCCTCTATCAGTTGCTCTACACCCGCGTCCCGGCCCATGCCGCGATTGGCGAGACGGTCGGT TGCGCCGACAAGTTGAAAAAGCCGTGGGCCAAGGCCTTGCTCAACGCTGTCCTGCGTAACGCTCAGCGCGAAAGCGAAACGATTTTCGCCGAACTGGAAC GCGATCCGGTGGTACGCACCGCCCACCCGCGTTGGCTGCAGAAATCCCTGAAGGCGTTCTGGCCAGAGCAATGGGAAGCCATCTGCGCCGCCAACAACGC GCATCCGCCAATGATCCTGCGGGTCAACCGTCGCCATCACAGCCGGGATGCCTACCTCGGTTTGCTGACCGACGCCGGTATCGCCGCCACACCCTGTGTC TACAGCCGTGACGGTATCGTGCTCGAAGCCGCCGCCGACGTGCGCAGTCTGCCGGGTTTCGCCGAGGGCTGGATCAGCGTGCAGGACGAAGCGGCGCAAC TGGCCGCTGATCTGCTCGATCTGGCACCGGGCCAACGGGTACTGGACGCCTGCTGCGCACCCGGCGGCAAGACGTGCCATATTCTCGAAGCCGAGCCAAA ACTGGCCGGAGTGGTGGCGGTAGACCTGGAAGCCAAGCGTCTGGTGCGAGTGCGGGAAAACCTCGAACGCCTGAAACTGAGCGCCGAACTGATTGCCGCT GACGGCCGCGACACTCAGGCGTGGTGGGACGGCAAGCCGTTCCAGCGCATCCTGCTGGACGCGCCATGCTCGGCGACGGGCGTGATCCGTCGTCATCCGG ACATCAAGCTGACCCGCCAGCCCGACGACATCGCCGCGCTGGCTCTGCTGCAAGGCGAGCTGCTCGACGCCATGTGGAACACCCTGGAAGTCGGCGGCAT TCTGCTATATGCCACCTGCTCGACGCTGCCGACCGAGAACACCGAAGTCATCGAAGCGTTCCTCGCCCGCACGCCGGGCGCCCGTGAACTGGACCTCGCC ACGGCGGCCGGCATCAAGCAGCCCCATGGCCGCCAGTTGCTCGCCCAGGAAGGCGGCCACGACGGGTTCTACTACGCCAAGCTGATCAAGATCGCCGCCG CGCGCGGTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGGATTCAATGGAGTGACTGGATGAAAATCATCATCCTCGGCGCAGGGCAGGTCGGCGGTTCGCTGGCGGAACACCTGGCCAGCGAAGCCAACGACATA ACCGTGGTCGATACCGATGGCGAACGCCTGCGCGACCTCGGCGACCGCCTGGACATCCGCACGGTGCAGGGCCGCGGTTCGTTTCCGACCGTGCTGCGCC AGGCCGGCGCCGACGACGCCGACATGCTGGTTGCCGTGACCAACAGCGACGAAACCAACATGGTCGCCTGCCAGGTCGCCCACACCCTGTTCCACACCCC GACCAAGATCGCCCGGGTTCGTGAGGCCGCGTACCTGACCCGCGAAGAGCAGTTGTTCCAGAATGAAGCGATTCCGGTGGACGTGCTGATCAGCCCGGAA CAAGTGGTCACCAACTACATCAAGCGTCTGATCCAGCATCCGGGCGCCTTGCAAGTGATCGACTTCGCTGAAGGCAAGGCACAACTGGTCGCGGTTCGCG
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| Amino Acid Sequence |
>ribosomal RNA small subunit methyltransferase B
MNPRLAAAKALAAVLNGKASLNSSLPTQLDKVEDRDRGFTQDLAFGTARWQPRLSALAAKLLQKPFKAADADVEALLLVGLYQLLYTRVPAHAAIGETVG CADKLKKPWAKALLNAVLRNAQRESETIFAELERDPVVRTAHPRWLQKSLKAFWPEQWEAICAANNAHPPMILRVNRRHHSRDAYLGLLTDAGIAATPCV YSRDGIVLEAAADVRSLPGFAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPKLAGVVAVDLEAKRLVRVRENLERLKLSAELIAA DGRDTQAWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQPDDIAALALLQGELLDAMWNTLEVGGILLYATCSTLPTENTEVIEAFLARTPGARELDLA TAAGIKQPHGRQLLAQEGGHDGFYYAKLIKIAAARG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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