Pseudomonas aeruginosa AZPAE14917, NS33_RS14830

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas aeruginosa strain AZPAE14917 AZPAE14917_contig_11, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ACGAACCGCGCTTGAGCGACGTGCGTGTCGTTTCCCTGCCACGCGACAACGACCAGCTCCGCCTGGCCTTCAGCATCGAAGGGTTGCTGGAGGTGGAAGG TTTCAAGCGCCAGGTGAGTTTTTCCGCATGCCTGGATGGCAGCGGCCAGGTGAAGGTCAGCTAAGGAGGTTTCGATGTCCGGCAAACCCGCAGCCCGCGT TTCCGATCCCACCGCTTGTCCGCTCCCCGGGCACGGCAGCAATCCCATCGTCGTCGGTTCCGCCGACGTGTTCTTCGACGGCCTCGCGGCGGCCCGCCAG GGTGACGCCTCGGCCTGGCGCTGTACCGCTCGATGCCTGGTTCGTCCATGAGGTCTTCTGAGATGGGCGCGAATCGGGTCGATTACGGAAAGACAACGGA CACCGTGGGTTTCCGATCTTCAGGCCAGAAATGTCATTGCGGTTTTGGCGGCAGCGGTCAGACGACTGCCATCAGTGAAACGATATCCAGCAGGTAAGCC
DNA Sequence for Gene
>NS33_RS14830
GTGTCCTTCAATCATTACTACCAGAGCGAACTCACCGCACTGCGCCAGCTGGGGCGCCGTTTCGCCGAGCGTAGCCCGGCCCTGGCCCCGTTTCTCGGGC AGGTCGGACGCGATCCGGATGTCGAGCGCCTGCTCGAGGGCTTTGCCTTCCTGACCGGGCGGTTGCGGCAGAAGCTGGACGACGAGTTGCCGGAACTCAG CCACTCGATGATGCACCTGCTGTGGCCGAACTATATGCGCCCGCTGCCGGCTTTCAGCATTCTCCAGTTCGACCCCCTGACCCGCCCGGGCGGGGCGCTG CGCGTGGAGCGCGATACGCCGGTCGAGAGCCGGCCGGTGGGCGAGGTCGCCTGTCGCTTCCGTACCTGCTACGCCACCGAAGTCCTGCCGCTGGTGCTGG AGGCGCTCAACTATTCGGTGACCGGCGAGGGTGCGCTGCTCGGCCTGCGCCTGGCGATGAACTGCGACGGGCATCTCGGCGAGCTGGGCCTGAGTCGGCT GCGCCTGCACCTGGCCGGCGAGCGCTACATCAGCCAGATGCTCTACCTGTGCCTGCTGCGCAACCTGGAGAGCATCCAGCTGATTCCGCTGGATGCCCAT GGGCGGCCGCTGGATGGCGTGGCCGGCAAGCCGATGTCGTTCCGCCTGACGGGCGAGCGGGTGCAGCCGGTGGGGTTCGCCGAAGACGAGGCGTTGATTC CCTATCCGCTGAATACCTTCCGTGGCTATCGCTACCTGCAGGAATACTTCGCGTTCCAGGACAAGTTCCTGTTCGTCGACGTGGATGGCCTTGACCTGCT CGGCGCTCTGCCCGAGGAAACCCTCAAGCAGGTCCGCGGCCTCGAGTTGCGCTTCGATATCCGCAAGAGCGGCATCCAGCGCCTGCACCCGACGCTGGAG AACGTCAAGCTGTACTGTACGCCGGTGGCCAACCTGTTCCGCCACGATGCGCTGCCGATCCGCCTAGACGGCAAGCAGGACGAATACCTGTTGATGCCGG CCGAATACAGCCTGGAGGACTGCGGGGTGTTCTCGGTAGAGGGCGTCACCGGCTGGCGGCCGGGCGGGCTCGGCTACCAGGCCTACGTACCGTTCGAGTC CTTCGAGCACGATCCCAGCTTCGACGTCCCGGAAGCACGGCCCCACTACAGCGTCCGGCAACGGACCTCGTTGCTGCACGATGGCCTGGACACCTACCTG AGCTTCGGCATCCGCCATCCCGAGCAGATCGAGACGCTGTCGGTGGAACTGACCTGCACCAACCAGAACCTGCCCCAACGGCTGCGCCTGGGCGATATCT GCGTCGCCTGCGAAGGCACGCCGGAGTTCCTCGGTTTCCGCAATATCACCCCGCCGACGCCGAGCTACGCGCCGCCGCTGAACCGCGATTTCCTCTGGAA ACTGATCAGCAACATGTCGCTCAACTACCTGTCGCTGGCCAACGTCGACGCGCTCAAGGTGATCCTCGAAACCTACGACCTGCCGCGCTACTACGACCAG CATGCGGCGAAGGTCAGCAAGCGCCTGCTGGGCGGGCTCAAGGCGGTCCGCCACGAGCATGTCGACCGCCTGCATCGGGGCCTGCCGCTGCGCGGCTTGC GTACCGAGCTGACGATCGATCCGGAAGGCTACATCGGCGAGGGCGACCTGTTCGTGTTCGCTTCGGTTCTGAACGAATTTTTCGCGCTTTACGCCAGCAT CAACTCCTACCACGAGTTGCGGGTGAGGAGCACACAGGGAGACGTGTACCAATGGAAACCGCGCATGGGTTTGCAGCCCCTGCTGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCGCGCTGGCCCGGGGCATTCGCGAGTACTCGCTGTTCCAGGCGGTCCTGCTGGTCATGGATCGCCTGCGTCAGGAACATCCCGGCCTGGGAGACGAGGC GCTCTACGATCAGTTGGAATTCCAGGCCAATCCTAGCCTCGGCTTCCCGGGCAGCGATGTCGATCGGGTGGAGTTCTTCGAAGAGCGCGGCATGCTGCGG GCGCGGCTGCGTTTCAACCTGATCGGCTTGTTCGGTGCCAGTTCGCCGTTGCCGGCGTTCTACAGCGAGCAGGCTCTGGGCGACAGCGAGGAGGGCAATC CTACGCGGAACTTCCTCGATCTCTTCCATCACCGCCTGCATCGGCTGCTGTTGCCGATCTGGCGCAAGTACCGCTACCGGGTGAGCTTCCAGAGCGGCGC GAGCGATGCGTTCTCCGCTCAGTTGTTCGCCCTCGTCGGATTGGGCGGGGAAGAGATCCGCAAGGCCAGGGAACTGAACTGGAAACGCCTGCTGCCCTAC
Amino Acid Sequence
>type VI secretion protein
MSFNHYYQSELTALRQLGRRFAERSPALAPFLGQVGRDPDVERLLEGFAFLTGRLRQKLDDELPELSHSMMHLLWPNYMRPLPAFSILQFDPLTRPGGAL RVERDTPVESRPVGEVACRFRTCYATEVLPLVLEALNYSVTGEGALLGLRLAMNCDGHLGELGLSRLRLHLAGERYISQMLYLCLLRNLESIQLIPLDAH GRPLDGVAGKPMSFRLTGERVQPVGFAEDEALIPYPLNTFRGYRYLQEYFAFQDKFLFVDVDGLDLLGALPEETLKQVRGLELRFDIRKSGIQRLHPTLE NVKLYCTPVANLFRHDALPIRLDGKQDEYLLMPAEYSLEDCGVFSVEGVTGWRPGGLGYQAYVPFESFEHDPSFDVPEARPHYSVRQRTSLLHDGLDTYL SFGIRHPEQIETLSVELTCTNQNLPQRLRLGDICVACEGTPEFLGFRNITPPTPSYAPPLNRDFLWKLISNMSLNYLSLANVDALKVILETYDLPRYYDQ HAAKVSKRLLGGLKAVRHEHVDRLHRGLPLRGLRTELTIDPEGYIGEGDLFVFASVLNEFFALYASINSYHELRVRSTQGDVYQWKPRMGLQPLL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site