Strain | Pseudomonas aeruginosa strain AZPAE14917 AZPAE14917_contig_1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GCTCGGCCAGCGTTTCCTGGAAGTCTGGTCGGGGCTGCCGGTGCTCTACCTGCTGATCATCCTGGCCAGCTTCGTCCAGCCGAACTTCTGGTGGCTGCTG GGCATCATGCTGCTGTTTTCCTGGATGAGCCTGGTGGACGTGGTCCGCGCCGAGTTCCTCCGCGGGCGCAACCTGGAATACGTCCGCGCCGCCCGGGCCC TCGGCATGCGCAACAGCGCCATCATGTTCCGTCACATCCTGCCGAACGCGATGATCTCGACCCTGACCTTCATGCCGTTCATCCTCACCGGCGCCATCGG CACCCTTACCTCCCTGGACTTCCTCGGCTTCGGCCTGCCGCCCGGCGCGCCGTCGCTGGGCGAGTTGGTCGCCCAGGGCAAGTCCAACCTCCAGGCACCC TGGCTGGGCATTTCCGCCTTCGTGGTGCTGGCGGTCATGCTGAGCCTGCTGGTGTTCATCGGCGAAGCCGCCCGCGACGCTTTCGACCCGAGGAAATGAG
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DNA Sequence for Gene |
>NS33_RS00495
ATGAGCGAGAACATTCTGGAAATCCGCGACCTCGCCGTCGAATTCCTCTCCGGCGAGCAACGCCAGCGGGTGGTCGAAGGCGTCAGCTTCGACATCCGCC ATGGCGAGACCCTGGCCCTGGTCGGCGAAAGCGGCTCGGGCAAGTCGGTGACCGCCCACTCCATCCTGCGCCTGCTGCCCTACTCCGTCGCCAGCCACCC AGCAGGCAGCATCCACTACCAGGGCGAGGATCTGCTCAAGCTCCCGGAACGGCGCCTGCGCGGGATCCGCGGCAACCGCATCGCCATGGTCTTCCAGGAA CCCATGACCTCGCTCAATCCGCTGCATACCATCGAGAAGCAGCTCGCCGAGGTCCTCGCCCTGCACAAGGGCCTGGGTGGCGCCAAGGCCAGCGCGAAAA TTCTCGAACTGCTCGAGCTGGTCGGCATCCCCGAACCGGCCAAGCGCCTGAAAGCCTATCCACACGAACTCTCCGGCGGCCAGCGGCAGCGGGTGATGAT CGCCATGGCCCTGGCCTGCGAGCCGCAACTGCTGATCGCCGACGAACCGACCACCGCGCTCGACGTCACCGTCCAGTTGAAGATCCTCGATCTGCTCAAG GACCTGCAGGCACGCCTGGGCATGTCCCTGCTGCTGATCACCCACGACCTCAACCTGGTCCGGCGCATCGCCCACCGCGTCTGCGTCATGCAACAAGGGC GGATCGTCGAGCAGGCTTCCTGCCAGGAACTCTTCGCAGCCCCGCGACACCCCTATACCCGCGAGCTGCTCAACGCCGAGCCCAGCGGTGCGCCGGCGAG CAACCCGCCCGGTGAAACCCTGTTGGCGGTGGACGACCTGCGGGTCTGGTTCCCGATCCGCAAAGGCGTGTTCCGCCGCACCGTGGACCACGTCAAGGCG GTCGACGGGGTCAATTTCGAACTACCCCGCGGGCAGACGCTGGGCATCGTTGGCGAAAGCGGCTCGGGCAAGTCGACCCTTGGCCTGGCAATCCTGCGGC TGCTGGAAAGCCAGGGCGGCATCCGCTTCGAAGGCACCCGGCTGGACGGTCTCGCGCAACATGACGTGCGCCCGCTGCGCCGCGAGATGCAGGTGGTGTT CCAGGACCCGTATGGCAGCCTCAGCCCACGCATGTGTGTCGGCGAGATCGTCGGCGAAGGCCTGCGCATCCATAGGATCGGCAGCGAGGCCGAACAGGAG CAGGCGATCATCGACGCGCTGGTGGAGGTCGGGCTCGATCCGCAGACCCGCTACCGTTACCCCCACGAATTCTCCGGCGGCCAGCGCCAGCGCATCGCCA TCGCCCGGGCACTGGTGCTGAAACCGGCACTGATCCTGCTCGACGAACCGACCTCGGCGCTCGACCGCACCGTGCAGCGCCAGGTCGTGGAATTGCTGCG GCAACTGCAGGGCAAGTACAACCTCACCTACCTGTTCATCAGCCACGACCTGGCGGTGGTCAAGGCGCTCAGCCACCAGTTGATGGTGGTTCGACATGGC AAGGTGGTGGAACAGGGCAGCGCCGAAGCGGTTTTCGCCTCGCCGCAACATCCCTATACGCAGCAATTGCTGGAGGCTGCCTTCATGGCCCCGGCAAGCG CGGAAAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GTAGCAGACAAGGAACGGACCATGGGATTTCTCACAGGAAAACGCGCCCTGATCGTCGGAGTCGCCAGCAAGCTCTCCATCGCTTCCGGCATCGCCGCCG CCATGCACCGGGAAGGCGCCGAACTGGCCTTCACCTACCAGAACGACAAGCTCAGGGGCCGGGTGGAGGAGTTCGCCAGTGGCTGGGGCTCGCGGCCGGA GCTGTGCTTCCCCTGTGACGTGGCCGACGACAGCCAGATCGAAGCGGTGTTCGCCGCCCTGGGCAAGCACTGGGACGGCCTGGACATCATCGTCCACTCC GTCGGATTCGCTCCAGGCGATCAGCTCGACGGCGACTTCACCGCGGTGACCACCCGCGAGGGCTTCCGCATCGCCCACGACATCAGCGCCTACAGCTTCA TCGCCCTGGCCAAGGCCGGACGGGAAATGATGAAGGGCCGCAACGGCAGCCTGCTGACCCTCTCCTACCTGGGCGCCGAACGGACCATGCCGAACTACAA
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Amino Acid Sequence |
>microcin ABC transporter ATP-binding protein
MSENILEIRDLAVEFLSGEQRQRVVEGVSFDIRHGETLALVGESGSGKSVTAHSILRLLPYSVASHPAGSIHYQGEDLLKLPERRLRGIRGNRIAMVFQE PMTSLNPLHTIEKQLAEVLALHKGLGGAKASAKILELLELVGIPEPAKRLKAYPHELSGGQRQRVMIAMALACEPQLLIADEPTTALDVTVQLKILDLLK DLQARLGMSLLLITHDLNLVRRIAHRVCVMQQGRIVEQASCQELFAAPRHPYTRELLNAEPSGAPASNPPGETLLAVDDLRVWFPIRKGVFRRTVDHVKA VDGVNFELPRGQTLGIVGESGSGKSTLGLAILRLLESQGGIRFEGTRLDGLAQHDVRPLRREMQVVFQDPYGSLSPRMCVGEIVGEGLRIHRIGSEAEQE QAIIDALVEVGLDPQTRYRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRQLQGKYNLTYLFISHDLAVVKALSHQLMVVRHG KVVEQGSAEAVFASPQHPYTQQLLEAAFMAPASAEN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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