Strain | Pseudomonas syringae pv. phaseolicola 1448A chromosome, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
CATGAACACTCCTCGTTAAGCATGAAGGAGTGCTGCAACTGACATTGTTCAGGCTCGCAAACATAGACTCGGGCTTTTCGCAAAAGTTCTCCCCCTTCAA GCAAGTTTCCTGCGGGCCATCGTAAAGCCTGCACGAAAAACGCAGCGCGACACGGTCGGCTGCGTGAATAGTCTTGTCGCCGGTTTCGCAGTTGATGATC ACTTATCTAACCCTGCGAAAACGACGCTGTTCCTGTGTAGGCAACCTGCTATTGAGCATGGATCCTGGCAAAAAGTTCCATTGGCACAATCACAGGCGTG AGCCGCAGACTGCACAAAGTTCTTTGAAATCAGTGCACTGGAGCATTTCCAGTAACAGATAACAGGGAAAACAATATGCATGACATCCGGGACTGGAGCA CAATCCATACCCGCTGTGGTCTCACATTGCCATGTAGGCGTGGCTATTGTGCCGTTACCCCAATACTTATACTAGTGGTCGCCAAGGGCAGAATTCGCAG
|
|
DNA Sequence for Gene |
>PSPPH_3956
|nadB
ATGAGTCAACATTTTCAGCATGACGTACTGGTAATTGGCAGTGGCGCTGCCGGATTGAGCCTGGCACTGACGCTTCCCGGACACCTGAGCATCGCAGTGC TGAGCAAAGGCGATCTGGCCAATGGCTCGACATTCTGGGCCCAGGGCGGTGTGGCAGCAGTACTGGATGACACCGATACCGTGCAGTCTCATGTTGAAGA CACGCTGAATGCCGGCGGCGGCCTTTGCAACGAAGGAGCAGTGCGTTTCACCGTCGAGCACAGCCGCGAGGCCATTCAGTGGCTGATCGATCAGGGCGTG CCTTTCACTCGGGGCGATGACGCAGATACCGACGAAAGCGGCTTTGAATTCCACCTGACACGCGAAGGCGGCCACAGCCACAGGCGGATCATCCACGCCG CCGATGCCACAGGCGCAGCGATCTTTCGTACCCTGCTTGAACAAGCCCGTAAACGGCCGAATATCGAACTGCTTGAACAGCGCGCCGCCATCGACCTGAT CACCGAACGCCGTCTCGGGCTGGAAGGCCAGCGCTGCCTGGGCGCTTATGTACTCAATCGCAACAGCGGTGAAGTGGACACCTACGGCGCGCGCTTTACC ATCCTCGCGTCAGGTGGCGCTGCCAAGGTTTATCTGTACACCAGCAACCCCGACGGTGCCTGCGGCGATGGCATCGCCATGGCCTGGCGTTCCGGTTGCC GGGTGGCGAATCTGGAATTCAACCAGTTTCACCCCACCTGCCTGTATCACCCCCAGGCCAAGAGTTTTCTGATCACCGAAGCACTTCGCGGCGAAGGCGC CTACCTCAAGTTGCCCAGCGGCGAACGCTTTATGCCACGGTTCGACGAACGGGCAGAACTGGCCCCTCGCGATATTGTTGCCCGTGCGATAGACCACGAA ATGAAGCGACTGGGTATCGACTGCGTTTATCTGGACATTAGCCACAAACCGGAAGCGTTCATCAAGACCCACTTTCCAACCGTCTACGAGCGCTGCCTGG AATTCTCCATCGACATCACTCGTCAGCCGATTCCGGTGGTCCCGGCGGCGCATTACACCTGTGGTGGTGTCATGGTAGACAGCAAGGGCCACACCGACGT GCCAGGCCTGTACGCCATCGGCGAGACCAGCTTCACCGGCCTGCACGGTGCCAACCGCATGGCCAGCAACTCACTGCTGGAGTGCTTCGTATATGCCCGC TCGGCAGCGGCAGACATCGAGCAGCAACTGGCCGACGTACAGATGCCCACCGACCTTCCGGCCTGGGACGCCAGCCAGGTCACTGATTCGGACGAAGACG TGATCATCGCGCACAACTGGGATGAACTGAGACGATTCATGTGGGACTACGTCGGCATTGTGCGTACCAACAAGCGCCTGCAACGCGCTCAGCACCGTGT ACGTTTGTTGCTGGATGAGATCGACGAGTTCTACAGCAACTACAAGGTCAGCCGTGACCTGATCGAGTTGCGCAACCTGGCGCAGGTGGCGGAACTGATG ATCTGCTCGGCCATGCAGCGCAAGGAAAGCCGTGGCCTGCATTACACGCTGGACTATCCCGACATGTTGCCGGAGGCGCTGGACACTATTCTGGTACCGC CCACTTACGTCGGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
ACTTCAGGCGTACACGCAGACGCCGGTGCGTGTCCGGCGTGAGCGCATCAAACGGGATGCAGCAGCTTTTTATCGAGCGGCCCGGCCGGCCTGCGACAAT CGGGCGAAAACGCAGAATCACGACCAACGGTAACGCGAGGCTGTCCGGACATAACTGCACGGGCTGCCAGCCGTCGCGTTGATTCCACAATTGCCAGCCT TGACGATCGCGCTTCAGCGCGGTGAAGGCTGCCGGATGACTGAGCAGGATCGAGCGCGGCAACGTCCAGGCAGCATGCATCAGACAGAACAGCACACCCA GTACCAACGCCAACGAAGCGATGTTCAGCCAGGACAACGCGATCAGCGCCAGCAGCTGAACGGCGAGATACGCCGTCAATAGCAGGCGCGAGGCCTGCCA GTGACATTCAAATCGATCACTTGGGCTGGACACGATCCAGAATCATGCGAACCATACGTTGCAATTCAGCATCCTCGGACTCGGCGCGCTGCATGAACCA
|
|
Amino Acid Sequence |
>L-aspartate oxidase
MSQHFQHDVLVIGSGAAGLSLALTLPGHLSIAVLSKGDLANGSTFWAQGGVAAVLDDTDTVQSHVEDTLNAGGGLCNEGAVRFTVEHSREAIQWLIDQGV PFTRGDDADTDESGFEFHLTREGGHSHRRIIHAADATGAAIFRTLLEQARKRPNIELLEQRAAIDLITERRLGLEGQRCLGAYVLNRNSGEVDTYGARFT ILASGGAAKVYLYTSNPDGACGDGIAMAWRSGCRVANLEFNQFHPTCLYHPQAKSFLITEALRGEGAYLKLPSGERFMPRFDERAELAPRDIVARAIDHE MKRLGIDCVYLDISHKPEAFIKTHFPTVYERCLEFSIDITRQPIPVVPAAHYTCGGVMVDSKGHTDVPGLYAIGETSFTGLHGANRMASNSLLECFVYAR SAAADIEQQLADVQMPTDLPAWDASQVTDSDEDVIIAHNWDELRRFMWDYVGIVRTNKRLQRAQHRVRLLLDEIDEFYSNYKVSRDLIELRNLAQVAELM ICSAMQRKESRGLHYTLDYPDMLPEALDTILVPPTYVG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|