Pseudomonas syringae pv. tomato DC3000, PSPTO_5248

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Sequence Data

Strain Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details]
DNA Sequence Upstream of Gene
AACCGGCCCGCGCGTGGCCGCCAAGCTTTATATAGAACTGTTTCAGGGCACACCGCTGCTGATGCAGCTGTTTCTGGTGTTCTTCGGGGTTGCCCTGATG GGCATGGACATTTCGCCGTGGGCTGCTGCGGCCCTGGCACTGACGCTGTTCACCAGCGCCTACCTCGCCGAGATCTGGCGCGGCTGCGTGGAGTCGATCT CCAAGGGCCAGTGGGAAGCTTCGGCCAGCCTGGCGATGACGCCACTGGAACAGATGCGCTACGTGATCCTCCCTCAAGCGCTGCGCATCGCGGTTGCCCC GACGGTCGGCTTTTCCGTACAGGTGGTCAAAGGCACAGCGGTAACTTCGATCATCGGTTTTACCGAGCTGACCAAGACCGGCAGCATGCTGGCCAACGCC ACGTTCGAACCTTTCATGGTCTATGGCTTCGTTGCCCTGGGCTATTTCATCCTCTGCTACCCCTTGTCGCTGTGCGCGCGCCATCTGGAAAGGAGACTGC
DNA Sequence for Gene
>PSPTO_5248
ATGCCTCTGCTTAGAATTTCCGCCCTGCATAAATACTATGGCGATCATCACGTCCTCAAAGGCATCGATCTTTCGGTCGAGGAAGGCCAGGTGGTGGCGA TCATCGGTCGCAGCGGCTCGGGTAAAAGCACCCTGCTGCGCACGCTCAACGGGCTGGAGTCGATCAACGACGGCGTGATTGAAGTCGATGGCGAATACTT GGACGCGGCACGCGCCGATCTGCGCACCCTGCGCCAGAAGGTCGGCATGGTGTTTCAGCAGTTCAATCTGTTCCCGCACCTGAGCGTTGGCGAGAACGTG ATGCTTGCGCCGCAGGTCGTGCAGAAGGTGCCAAAAGCGGAAGCCGCGAAACTGGCGAGAACGATGCTGGAGCGTGTCGGGCTGGGCGAGAAGTTCGATG CATACCCGGATCGCCTGTCTGGCGGGCAACAGCAACGTGTGGCAATAGCCCGCGCGCTGGCCATGTCGCCCAAAGTGTTGCTGTGCGACGAGATCACCTC GGCGCTGGACCCGGAGTTGGTCAACGAAGTGCTCAGCGTCGTGCGTCAATTGGCGGCGGACGGCATGACCCTGATCATGGTCACCCACGAAATGCGCTTC GCCCGTGAAGTGGGCGACAAACTGGTGTTCATGCATCAGGGCAAGGTGCATGAAGTCGGCGACCCGAAAGTACTGTTCGCCAACCCGAAAACTCCGGAAC TGGCGAATTTCATCGGGACAACGGAACAGGCGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CACGCAGCACTTTCACGACCGGACGCAGAGCGTCCAGAACGGCATGCGACGCGGAGCGTCGCACGATAGTCGAGATTATCGTTGCTCACGCGCCAGCTCA GACACCTATCGTTCCTCACGCTCCAGCGCAGGAACGCCTTGGGTGACGCTCTGCGTCACAAATTGGTGCCACGCTGCCGACTCAAGACCGGACGCAGAGC GTCCAGAACGGTATGCGACGCGGAGCGTCGCACGATGGTTACAGAACTATCACATCAATCAGATAGCCATACGCCATGCCATGATAGTAATACCGGATAT TTCCCGGGCCTGAACAGCTTCGCGTTGGCGGCAGGCATGGATCGTGGCACGATGGTGCGGTTATCGAACGGGACTTCCTGAACATGCCGCACTCCAAACC CAAGAATCTTTCACTGATCGCCGCTATCGACCTGGGCTCCAACAGCTTTCATATGGTTGTGGCTAAAGCCAATCAGGGCGAAATTCGCATTCTTGAGCGC
Amino Acid Sequence
>amino acid ABC transporter ATP-binding protein
MPLLRISALHKYYGDHHVLKGIDLSVEEGQVVAIIGRSGSGKSTLLRTLNGLESINDGVIEVDGEYLDAARADLRTLRQKVGMVFQQFNLFPHLSVGENV MLAPQVVQKVPKAEAAKLARTMLERVGLGEKFDAYPDRLSGGQQQRVAIARALAMSPKVLLCDEITSALDPELVNEVLSVVRQLAADGMTLIMVTHEMRF AREVGDKLVFMHQGKVHEVGDPKVLFANPKTPELANFIGTTEQA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site