Pseudomonas syringae pv. tomato DC3000, PSPTO_0458 (soxA-1)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGTGCCGAACATGTTCTTCAACTGCGGCTGGGGCACAGGTGGCTTCAAGGCCACACCGGGCTCGGGCAACGTATTTGCTGCAAGCCTGGCCAAGGGCG AAATGCACCCGCTGGCCAAACCGTTCTCCATCGACCGCTTCCATAACGGTGCGCTCATCGACGAACACGGCGCTGCAGCCGTAGCCCACTAACAGGAGAA CCCGACCATGCTGCATATCTTCTGTCCTCACTGTGGCGAGCTGCGCTCCGAAGAGGAATTCCATCCGTCCGGCCAGGCGCACATCCCGCGTCCGCTGGAC CCCGCTGCCTGCACCGATGAGCAATGGGGCGACTACATGTTCTTCCGCGACAACCCGCGTGGCCTGCACCACGAGCTGTGGATTCACGCTGCCGGTTGCC GTCAGTACTTCAACATGACGCGCAACACGGTGACCTACGAGATTCTCGAAACCTATCCGATCGGTAGCAAGCCGCAGTTCACGGATCAGGGAGAAAAGGC
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| DNA Sequence for Gene |
>PSPTO_0458
|soxA-1
ATGAGCCAGAGCAATCGCCTGCCCAACGGCGGCCGCATCAACCGCAGCAAAGTGCTCAACTTCACCTTCAACGGCCAGACCTATCAGGGCTTTGAAGGCG ACTCGCTGGCGTCCGCGCTGCTGGCCAATGGCGTTGAGATCATTGGTCGCAGTTTCAAGTATTCCCGGCCACGCGGCATCTTCGCGGCGGGTTCGGAAGA ACCGAACGCCGTGTTGCAGATCGGCGCGACCGAAGCGACGCAGATCCCCAACGTGCGCGCCACCCAGCAAGCGCTTTATTCGGGGCTGGTGGCGACCAGC ACCAACGGCTGGCCGAGCGTAAACACCGACGTAATGGGCATTCTGGGCAAGGTCGGCGGCAAACTGATGCCTCCGGGCTTCTACTACAAAACCTTCATGT ACCCGCAATCGTTCTGGATGACGTACGAAAAGTACATCCGCAAGGCGGCAGGCCTCGGTCGCTCACCGACCGAGAACGACCCGGACAGCTACGACGCGAT GAACCAGCACTGTGATGTGCTGATCGTCGGCGCAGGCCCGGCTGGTCTGGCCGCCGCACTGGCAGCGAGCCGCAGCGGCGCCCGAGTGATCATCGCCGAT GAACAGGAAGAATTCGGCGGCAGTCTGCTCGACAGCCGTGAAAGCCTGGATGGCAAACCCGCTGCCGAGTGGGTTGCAACAGTAGTTGCCGAGCTGAAAA GCCTGCGCAACGTGACACTGCTGCCACGCGCCACGGTCAACGGTTATCACGATCACAATTTTCTGACCATCCACGAGCGTCTGACCGACCACCTCGGTGA TCGCGCGCCCATCGGCATGGTTCGCCAGCGCATGCACCGGGTGCGCGCCAAACGTGTGGTGCTGGCTGCCGGCACGCACGAGCGGCCGCTGGTCTACGGC AACAACGATGTGCCGGGCAACATGCTTGCGGGTGCAATCTCGACGTATGTACGTCGTTACGGCGTCGCGCCGGGCAAAAAACTCGTGCTGTCCACCAACA ACGACCACGCCTACCGCGTCGCGCTGGACTGGCTCGACGCCAGCCTGCACGTGGTGGCGATTGCCGATGCGCGGCACAATCCACGCGGCCCGCTGGTTGA AGAGGCTCGCGCCAAAGGCATTCGTATTCTGACCGGCAGCGCCGTGATCGAAGCGCGTGGCAGCAAGCGGGTGAGCGCTGCACGCGTTGCCGCCATCGAC CTCAAAACGCACAGCGTCACCAGCCCCGGCGAGTGGCTTGAGTGCGATCTGGTGGCAAGTTCCGGCGGTTACAGCCCCATCGTCCATCTGGCCTCGCACC TGGGCGGCAAGCCGGTCTGGCGTGAAGACATCCTCGGTTTCGTGCCGGGCGAAGCGCCGCAGAAACGTATCTGTGTGGGCGGCGTGAACGGCGTCTACAG CCTGGCAGACAGCCTGGCCGATGGTTTCGAGGGTGGCGTGCGCGCTGCCAGCGAAGCAGGCTTCAAGATTGTCGAGGGCGTGATGCCCAAAGCCCTCAGC CGCGCCGAAGAACCGACGCTGGCGCTGTTCCAGGTGCCCCATGAAAAAGGCACTGCACGGGCGCCCAAGCAATTCGTCGATTTCCAGAACGACGTGACCG CCGCCGCCATTGAACTGGCGACCCGTGAGGGTTTCGAGTCGGTCGAGCACGTCAAACGCTACACCGCGCTGGGCTTCGGCACCGATCAGGGCAAGCTGGG CAACGTCAACGGGCTGGCCATCGCAGCCCGCTCGTTGAACGTGTCGATCCCGGAAATGGGCACCACCATGTTCCGCCCCAACTACACACCGGTCACCTTC GGCGCGATTGCCGGGCGTCATTGCAAGCACATCTTCGAGCCGGTGCGCTTCACCGCGCTGCATGCCTGGCACATCAGAAACGGTGCCGAATTCGAAGACG TCGGCCAGTGGAAACGCCCGTGGTACTTCCCTAAAAACGGTGAAGACCTGCCCGCTGCCGTGGCGCGTGAATGCAAGGCGGTGCGTGACAGCGTCGGCCT GCTGGACGCCTCGACGCTGGGCAAGATCGACATTCAAGGGCCGGATGCGCGCGAATTCCTCAACCGCATCTATACCAACGCCTGGACCAAACTGGACGTG GGCAAGGCCCGTTACGGCCTGATGTGCAAGGAAGACGGCATGGTCTTCGATGACGGTGTGACTGCCTGCCTCGCCGACAACCACTTCCTGATGACCACCA CGACGGGCGGTGCTGCACGCGTCCTGCAATGGCTGGAAATCTATCAGCAAACCGAATGGCCGGACCTGAAAGTGTATTTCACCTCAGTGACCGATCACTG GGCGACCCTGACGCTGTCTGGCCCCAACAGCCGCAAGCTGCTCAGCGAAGTGACCGATATCGACCTGGGCCGTGAAGCGTTCCCGTTCATGACCTGGAAA GAAGGCTTGGTCGCAGGCGTGCCGGCGCGGGTGTTCCGTATCTCGTTTACCGGCGAGCTGTCCTATGAGGTCAACATTCAGGCCGACTACGCGATGGGTG TTCTGGAAAAGATCGCCGAGGCCGGCAAGCAGTACAACCTGACGCCTTATGGCACTGAAACCATGCACGTACTGCGCGCCGAAAAGGGTTTCATCATCGT CGGTCAAGACACCGACGGCTCGATGACCCCGGACGATCTGAACATGGGCTGGTGTGTCGGGCGGACCAAACCGTTCTCGTGGATTGGCTGGCGCGGCATG AACCGCGAAGACTGTGTGCGTGAACAACGCAAGCAATTGGTCGGCCTCAAACCCATAGACTCGACCCAATGGCTACCGGAAGGCGCTCAGTTAGTGTTCG ACACCAGGCAGGCGATCCCGATGAGCATGGTCGGCCACGTGACCTCCAGCTACGCGCACAACTCGCTGGGCTATTCGTTCGCGATGGGCGTGGTCAAAGG CGGCCTGAACCGGATCGGCGAGCACGTGTTCGCGCCGCTGGCCGATGGCAGCGTGATCGAAGCCGAGATCGTCTCGTCGGTGTTCTTCGACCCGAAGGGC GAGCGTCAGAATGTTGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACAGCAGGGCCAAACAGAATTTAAAGCAGGTGAATCATGAGCACAGCCAACGTTTACCAGCAGCGCCCGACCACCGACGTCAAAGCCGAGTCGCCGCTGT TCCACGCCAGTCTCGACAGCCTGATCGGCAAAGGCCGCGCCAGTCCGGGCGTGTTTCTGCGCGAAAAGAAACTGCTGGGCCACCTCACCCTTCGGGGTGA TGCCCACGACCAGGCCTTCGCCGCTGGCGTACACAAGGCGTTGGGCATGGAACTGCCAGCAGCCCTGATGTTGGTGATCAACGGCGAAAGCTCGCTGCAA TGGCTCGGCCCGGACGAGTGGCTACTGATCGTGCCAAGCGGCGAAGAATTCGCGGCAGAACAGAAGCTGCGTGAGGCGCTGGCAGGGCTGCACATCGCCA TCGTGAACGTCAGCGGCGGCCAGTCGATCCTCGAACTGACCGGCCCGAAAGTGCGCCAGGTATTGATGAAATCCACCAGCTACGACGTCCACCCGGACAA
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| Amino Acid Sequence |
>sarcosine oxidase, alpha subunit
MSQSNRLPNGGRINRSKVLNFTFNGQTYQGFEGDSLASALLANGVEIIGRSFKYSRPRGIFAAGSEEPNAVLQIGATEATQIPNVRATQQALYSGLVATS TNGWPSVNTDVMGILGKVGGKLMPPGFYYKTFMYPQSFWMTYEKYIRKAAGLGRSPTENDPDSYDAMNQHCDVLIVGAGPAGLAAALAASRSGARVIIAD EQEEFGGSLLDSRESLDGKPAAEWVATVVAELKSLRNVTLLPRATVNGYHDHNFLTIHERLTDHLGDRAPIGMVRQRMHRVRAKRVVLAAGTHERPLVYG NNDVPGNMLAGAISTYVRRYGVAPGKKLVLSTNNDHAYRVALDWLDASLHVVAIADARHNPRGPLVEEARAKGIRILTGSAVIEARGSKRVSAARVAAID LKTHSVTSPGEWLECDLVASSGGYSPIVHLASHLGGKPVWREDILGFVPGEAPQKRICVGGVNGVYSLADSLADGFEGGVRAASEAGFKIVEGVMPKALS RAEEPTLALFQVPHEKGTARAPKQFVDFQNDVTAAAIELATREGFESVEHVKRYTALGFGTDQGKLGNVNGLAIAARSLNVSIPEMGTTMFRPNYTPVTF GAIAGRHCKHIFEPVRFTALHAWHIRNGAEFEDVGQWKRPWYFPKNGEDLPAAVARECKAVRDSVGLLDASTLGKIDIQGPDAREFLNRIYTNAWTKLDV GKARYGLMCKEDGMVFDDGVTACLADNHFLMTTTTGGAARVLQWLEIYQQTEWPDLKVYFTSVTDHWATLTLSGPNSRKLLSEVTDIDLGREAFPFMTWK EGLVAGVPARVFRISFTGELSYEVNIQADYAMGVLEKIAEAGKQYNLTPYGTETMHVLRAEKGFIIVGQDTDGSMTPDDLNMGWCVGRTKPFSWIGWRGM NREDCVREQRKQLVGLKPIDSTQWLPEGAQLVFDTRQAIPMSMVGHVTSSYAHNSLGYSFAMGVVKGGLNRIGEHVFAPLADGSVIEAEIVSSVFFDPKG ERQNVE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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