Pseudomonas stutzeri A1501, PST_3964 (pilU)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri A1501 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGCACGCTGCACACCACCTCCGCCGCCAAGACCATCGACCGCGTGGTCGACGTGTTCCCGGCCGAAGAAAAATCCATGGTCCGCTCGATGCTCTCCGAAT CGCTGCAGGCGGTGATCTCGCAGACCCTGCTGAAGAAGATCGGTGGCGGCCGCGTCGCGGCCCACGAGATCATGATCGGCACCCCGGCGATCCGTAACCT GATCCGCGAGGACAAGGTGGCGCAGATGTACTCGGCGATCCAGACCGGCGGTTCGCTTGGCATGCAGACCCTGGACATGTGCCTCAAGGGGCTGCTGGCC AAGGGCCTGATCAGCCGCGACAGCGCGCGGGAAAAGGCCAAGCAGCCCGAGAACTTCTAAACGCCTGACAACCCCGGACGCCGCCCGGTGCGGCGCTTGC CACGATTGCGAGTACGACGATGGAATTCGAGAAACTTCTGCGCCTGATGGTCGAAAAAGGCGGCTCCGATCTGTTCATCACGGCTGGCGTGCCGCCATCG
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| DNA Sequence for Gene |
>PST_3964
|pilU
ATGAAGGTCAACGGCAAGATCATGCCGGTGAGCAAGACGCCCATGTCGCCGGAGATGACCCGGGAAACCGTGCACGGCGTGATGAACGAGCAGCAGCGCC GCGAGTTCACCGAGAACCACGAATGCAACTTCGCCATCAGCGCCCGCGGCATCGGCCGCTTCCGTGTCAGCGCGTTCTATCAGCGAAACCTGGCCGGCAT GGTGCTGCGTCGCATCGAGACCAACATCCCGACCATCGAAGAACTCAAGCTGCCGGACGTCCTGAAGAAGCTGTCGATGACCAAACGTGGTCTGGTGCTG TTCGTCGGCGCCACCGGTACCGGCAAGTCGACGTCGCTGGCCTCGATGATCGGCTACCGCAACAAGAACTCCAGCGGGCACATCATCTCCATCGAAGACC CGATCGAATTCATCCACCAGCACCAGAATTGCATCGTCACCCAGCGCGAAGTGGGCATCGACACCAGCTCCTTCGAGGTGGCGCTGAAGAACACCCTGCG CCAGGCGCCGGACGTGATCCTCATCGGCGAGATCCGTACCCGCGAAACCATGGATTACGCGGTCGCCTTCGCCGAAACCGGCCACCTGTGCCTGGCCACG CTGCACGCCAACAATGCCAACCAGGCGCTGGACCGCATCATCAACTTCTTCCCGCCGGACCGGCACAACCAGGTCTGGATGGACCTGTCGCTCAACCTCA AGGCCATCGTCGCCCAGCAGCTGGTTCCGACCCCGGACGGCAAGGGTCGTCGTGCGGTCATCGAGGTGCTGATCAATACGCCGCTGGCGGCCGACCTGAT CCGCAAGGGCGAGGTGCACGAGCTGAAATCGCTGATGAAGCGCTCCACCGAGCTGGGTATGCAGACCTTCGACCAGGCGCTGTACAACCTCTACGTGCAG GGCGAGATCACCTACGAAGATGCCCTGCTGCATGCTGACTCGGCCAACGACCTGCGACTGCTGATCAAGCTGGGTTCGGAAACCGACGGTGAGCACCTGA CCAGCGTATCCCAGGGCCTGAGCCTGGAGGTCAGCGACGAGGACCCGGGCCGGCGCTTCCGTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGTCCGCGTCCGGCTGCCGGCCGATGCGCTTGCCCTGCCGGGCGGCAACGCGCTCGGCCTGGCCATCACGCTGCGCACCGGCGCGTGCGCGACTCATCA GTTGCGGAATCAGCATGCCTTCGGGCAGGTTCTTCCAGAACCGTACCGGCAGGTTGCTTTGCAGCACGCTGCGGTTCAATCGGGCCGGATTGAAGGTGCT CTCGTAATAGGCCTTCCATAGTTCGCCGCCGGGGTCGGCAGCGCTCTGCGCCAGGCGCTGCCATTGTGGCGGGCAGGGGCGGACGTGATGAAGGGTCTGA CCGTTCCAGCAGACACCATCGTCCGGTGTCGCGATCAGCCAGCTGTTCTCGCCCATGCGCTCGGCGAAATGGTGTGCGGCCCATGGCAGCACGTCGTGCG CCGGTTCGAACCAGGCTACATGCCGCGGGCCGTCGCCATCTTCCAGCGGGCTGAAGCGCAGGAAGGCATGCAGATGGTGCGCCTCGCGGCGAACCGCCTT
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| Amino Acid Sequence |
>twitching motility protein PilU
MKVNGKIMPVSKTPMSPEMTRETVHGVMNEQQRREFTENHECNFAISARGIGRFRVSAFYQRNLAGMVLRRIETNIPTIEELKLPDVLKKLSMTKRGLVL FVGATGTGKSTSLASMIGYRNKNSSGHIISIEDPIEFIHQHQNCIVTQREVGIDTSSFEVALKNTLRQAPDVILIGEIRTRETMDYAVAFAETGHLCLAT LHANNANQALDRIINFFPPDRHNQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLINTPLAADLIRKGEVHELKSLMKRSTELGMQTFDQALYNLYVQ GEITYEDALLHADSANDLRLLIKLGSETDGEHLTSVSQGLSLEVSDEDPGRRFR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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