Pseudomonas aeruginosa PA7, PSPA7_6007 (algR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:2000147 positive regulation of cell motility
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5261
 ECO:0000249
sequence similarity evidence used in automatic assertion		 12379685
Biological Process GO:1901031 regulation of response to reactive oxygen species
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5261
 ECO:0000249
sequence similarity evidence used in automatic assertion		 12379685
Biological Process GO:1900192 positive regulation of single-species biofilm formation
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5261
 ECO:0000249
sequence similarity evidence used in automatic assertion		 3108855
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00448
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04397
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PA7 genes in this class
Secreted Factors (toxins, enzymes, alginate) Other PA7 genes in this class
Two-component regulatory systems Other PA7 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pap02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1 113 6.8E-32
FunFam G3DSA:3.40.50.2300:FF:000134 Autolysin response regulator LytR - - 1 129 1.6E-56
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1 121 9.68E-34
PANTHER PTHR48111 REGULATOR OF RPOS IPR039420 Transcriptional regulatory protein WalR-like 1 221 8.4E-26
Gene3D G3DSA:3.40.50.2300 - - - 1 125 9.4E-34
CDD cd17532 REC_LytTR_AlgR-like - - 3 121 8.6878E-54
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 3 113 4.8E-27
Gene3D G3DSA:2.40.50.1020 - - - 138 247 3.4E-15
FunFam G3DSA:2.40.50.1020:FF:000002 DNA-binding response regulator AlgR - - 139 247 2.6E-62
SMART SM00850 LytTR_3 IPR007492 LytTR DNA-binding domain 148 246 4.6E-25
Pfam PF04397 LytTr DNA-binding domain IPR007492 LytTR DNA-binding domain 149 245 2.2E-21

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.